mRNA_H-elongata_contig10181.155.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.930e-21 Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1 Query: 1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECT---LSTNGSTS--FSSGGSSPLALSDDSSRISFCVNPSDPCYN 384 ENNNE C YDGGDCC CT ++ YS +A C+DPSA C D + V + G + +G+G CD++NNNEGC YD GDCCECT L T+ T F +G + A C++P+ PC N Sbjct: 68 QENNNEICGYDGGDCCECTCVNAWDDDYS--CAANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFA----------CIDPNAPCVN 188
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 3.720e-17 Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 1 Query: 1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISF-CVNPSDPCYN 384 M+NNNE C YDGGDCC CT +D P+ S+F C+DP+A C D ++ + IG+G CD DNNNE C YD GDCCECT + L D + R +F CV+P+ PC + Sbjct: 226 MDNNNEACAYDGGDCCECT-CEDTPNNRCGRWSSFA-CIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCES-------------LEDDDWACRNNFACVDPNAPCVD 339
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 6.980e-17 Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 7 NNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQS--TCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISFCVNPSDPCYN 384 NNNE C YDGGDCC CT + D + + A C+DP+A C D + V + C+ IE +GDG CD NNNE C YD GDCCECT ++ S+ + + D S C++P+ C++ Sbjct: 220 NNNEQCGYDGGDCCECTCVVDWSAEFGCTEFA---CIDPTAPCVDDDDVTADALENCM---IEYLGDGYCDTYNNNEICDYDGGDCCECTCGSD---------STDVLVGSDCSDF-VCIDPTASCFD 331
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.130e-15 Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 7 NNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQS--TCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISFCVNPSDPCYN 384 NNNE C YDGGDCC CT + D + + A C+DP+A C D + V + C+ +E +GDG CD NN E C YD GDCCECT G S L C++P+ C++ Sbjct: 71 NNNEQCGYDGGDCCECTCVVDWSAEFGCTEFA---CIDPTAPCVDDDDVTADALENCM---MEYLGDGYCDTYNNIEICDYDGGDCCECTC----------GSDSTDVLDXXXXXXXXCIDPTASCFD 182
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 1.100e-10 Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 3 Query: 390 NLGNGICDEENNNDGCDYDKGDCCPCTCV----SGNYPCG-SHGFSCLDPNVTSLE 542 ++G+GICDEENNN+ C YD GDCC CTCV +G Y +GF+C+DPN + + Sbjct: 15 SVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFD 70
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.070e-10 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 Query: 393 LGNGICDEENNNDGCDYDKGDCCPCTCVSGNYPCGSHGFSCLDPNVTS 536 +G+G CD NNN+ CD+D GDCC CTCVSG Y CG + F C DP+V++ Sbjct: 318 IGDGHCDYYNNNEECDWDGGDCCACTCVSGYYTCGYYTFDCEDPSVST 365
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9 Identity = 46/140 (32.86%), Postives = 61/140 (43.57%), Query Frame = 1 Query: 4 ENNNEGCLYDGGDCCVCTRID----------DGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISF-CVNPSDPCYNLE 390 +NN E C +DGGDCCV + +D D P S + L C+DP TC +EDIG+GRCD + NNE C +D GDCC +P L + + C +P+ P Y LE Sbjct: 180 DNNVEECSFDGGDCCVDSCVDAKYTCGVTYRDQCDPQSSDCNLRLICLDPVYKTPAPTPTLFNRTCP---VEDIGNGRCDDEYNNEFCLFDGGDCC-----------------APSCLGESCGAYEYDCKDPNTPEYGLE 299
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.160e-9 Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3 Query: 363 PKRPLLQS*NLGNGICDEENNNDGCDYDKGDCCPCTC-VSGNYPCGSHGFSCLDPNVTSLE 542 P L +G+G+CD++NNN+ C +D GDCC CTC + Y CG++ + CLDP+ T+ E Sbjct: 323 PSLSLCDDLRIGDGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLDPSGTTCE 383
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 9.930e-9 Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 1 Query: 1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECT 270 + NN+ C YDGGDCC C+ ID GP Y S F C+DP C + A ++T + + DG CD NN C YD GDCCEC+ Sbjct: 99 LVNNHPSCDYDGGDCCECSCID-GPD-YGCGSIGFA-CLDPD--CGNTTETAPENTTCEESW--MNDGYCDSSNNYPSCDYDGGDCCECS 181
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8 Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 393 LGNGICDEENNNDGCDYDKGDCCPCTCVSG---NYPCGS-HG-FSCLDPNVT 533 +GNG CDEENNN+ C YD GDCC CTC S +Y C S HG F+C DPN + Sbjct: 11 MGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNAS 62 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10181.155.1 >prot_H-elongata_contig10181.155.1 ID=prot_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAback to top mRNA from alignment at H-elongata_contig10181:1073..1907+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10181.155.1 ID=mRNA_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at H-elongata_contig10181:1073..1907+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10181:1073..1907+ >mRNA_H-elongata_contig10181.155.1 ID=mRNA_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig10181:1073..1907+ (Himanthalia elongata Himel1 dioecious)back to top |