mRNA_H-elongata_contig10177.153.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10177.153.1
Unique NamemRNA_H-elongata_contig10177.153.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10177.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10177contigH-elongata_contig10177:2792..3699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10177.153.1prot_H-elongata_contig10177.153.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10177 2811..3555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.2337437-UTR-H-elongata_contig10177:2791..28101622929557.2337437-UTR-H-elongata_contig10177:2791..2810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10177 2792..2810 +
1691679069.0695708-UTR-H-elongata_contig10177:2791..28101691679069.0695708-UTR-H-elongata_contig10177:2791..2810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10177 2792..2810 +
1622929557.28521-UTR-H-elongata_contig10177:3555..36991622929557.28521-UTR-H-elongata_contig10177:3555..3699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10177 3556..3699 +
1691679069.0938654-UTR-H-elongata_contig10177:3555..36991691679069.0938654-UTR-H-elongata_contig10177:3555..3699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10177 3556..3699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.2512362-CDS-H-elongata_contig10177:2810..29191622929557.2512362-CDS-H-elongata_contig10177:2810..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10177 2811..2919 +
1691679069.078945-CDS-H-elongata_contig10177:2810..29191691679069.078945-CDS-H-elongata_contig10177:2810..2919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10177 2811..2919 +
1622929557.2662303-CDS-H-elongata_contig10177:3409..35551622929557.2662303-CDS-H-elongata_contig10177:3409..3555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10177 3410..3555 +
1691679069.086424-CDS-H-elongata_contig10177:3409..35551691679069.086424-CDS-H-elongata_contig10177:3409..3555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10177 3410..3555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10177.153.1

>prot_H-elongata_contig10177.153.1 ID=prot_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MPDRRSVDVSVGMIVIKRESCLGDGCSKNHERIEITEAGAVVAGAFTKEE
DKYQRVSAGSVRRQRVPRRSSNLNGAATVVVKHD*
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mRNA from alignment at H-elongata_contig10177:2792..3699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10177.153.1 ID=mRNA_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig10177:2792..3699+ (Himanthalia elongata Himel1 dioecious)
CGTGAAGAACGGGTGCTCCATGCCAGATAGAAGGAGCGTCGACGTCTCGG
TGGGAATGATAGTCATCAAAAGAGAATCGTGCTTGGGCGATGGCTGCTCC
AAAAATCACGAGAGGATCGAAATAACAGGCAAGGCGAATGTTGGATATCA
GTTCGCGTTGTAGTAAGATAATGATATGGGTCTTAGCCAACTTGTTACAA
GAATGTGGAAACTGGCGGGGGAGAACACCCAGATCGGCTGCAAAGCGAAA
TGAGGCTTTCCGTACGCTTATGTGTGCCATTTTGTTCTTTGGCTTCTCTT
GGTAGAAGACACCGTGGCTCAATCATGTATAATTACTAAGAAATTGAAAT
TGATCGTGGCACGCGCTCACCACAGAGTCACATTGCTCGGATAAAAATAC
AAACACCACGGTTGCCATGACTTATGATACCGATACTGTAAATCATTATC
TAAACGTTTTCCAAATTTTCAAGCTCATTGTAAGATAAGCGCGCGACAGA
TTCACAGCACGTAGGGGGGCCTCGTGGGTGTTATTCGATGTTGTCTTGTG
CAAAATTCATTTTAATGTCATTTCGTGACTTTGACAAGACCTGTATTCCC
GCACCTTATTGCATGCAGAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACT
AAGGAGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCA
GAGAGTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCG
TCAAGCACGATTGAATTACATGTAGAGCCAAAGCCGGTTGAAAAGGTCCA
GATACTACATTTTATTATTTCTCACATAAGCTAATGTCAAATTCTAGCCC
GAAGCCCCAAAGTAGACGAGCCACCATCAGGAGAAAAAATTCAACGTATT
TTCCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig10177:2792..3699+

>mRNA_H-elongata_contig10177.153.1 ID=mRNA_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig10177:2792..3699+ (Himanthalia elongata Himel1 dioecious)
ATGCCAGATAGAAGGAGCGTCGACGTCTCGGTGGGAATGATAGTCATCAA
AAGAGAATCGTGCTTGGGCGATGGCTGCTCCAAAAATCACGAGAGGATCG
AAATAACAGATGCCAGATAGAAGGAGCGTCGACGTCTCGGTGGGAATGAT
AGTCATCAAAAGAGAATCGTGCTTGGGCGATGGCTGCTCCAAAAATCACG
AGAGGATCGAAATAACAGAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACT
AAGGAGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCA
GAGAGTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCG
TCAAGCACGATTGAAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACTAAGG
AGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCAGAGA
GTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCGTCAA
GCACGATTGA
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