Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 418 |
| Cds size | 255 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929557.2337437-UTR-H-elongata_contig10177:2791..2810 | 1622929557.2337437-UTR-H-elongata_contig10177:2791..2810 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10177 2792..2810 + |
| 1691679069.0695708-UTR-H-elongata_contig10177:2791..2810 | 1691679069.0695708-UTR-H-elongata_contig10177:2791..2810 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10177 2792..2810 + |
| 1622929557.28521-UTR-H-elongata_contig10177:3555..3699 | 1622929557.28521-UTR-H-elongata_contig10177:3555..3699 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10177 3556..3699 + |
| 1691679069.0938654-UTR-H-elongata_contig10177:3555..3699 | 1691679069.0938654-UTR-H-elongata_contig10177:3555..3699 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10177 3556..3699 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929557.2512362-CDS-H-elongata_contig10177:2810..2919 | 1622929557.2512362-CDS-H-elongata_contig10177:2810..2919 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10177 2811..2919 + |
| 1691679069.078945-CDS-H-elongata_contig10177:2810..2919 | 1691679069.078945-CDS-H-elongata_contig10177:2810..2919 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10177 2811..2919 + |
| 1622929557.2662303-CDS-H-elongata_contig10177:3409..3555 | 1622929557.2662303-CDS-H-elongata_contig10177:3409..3555 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10177 3410..3555 + |
| 1691679069.086424-CDS-H-elongata_contig10177:3409..3555 | 1691679069.086424-CDS-H-elongata_contig10177:3409..3555 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10177 3410..3555 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10177.153.1 >prot_H-elongata_contig10177.153.1 ID=prot_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MPDRRSVDVSVGMIVIKRESCLGDGCSKNHERIEITEAGAVVAGAFTKEE
DKYQRVSAGSVRRQRVPRRSSNLNGAATVVVKHD* back to topmRNA from alignment at H-elongata_contig10177:2792..3699+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10177.153.1 ID=mRNA_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig10177:2792..3699+ (Himanthalia elongata Himel1 dioecious)
CGTGAAGAACGGGTGCTCCATGCCAGATAGAAGGAGCGTCGACGTCTCGG
TGGGAATGATAGTCATCAAAAGAGAATCGTGCTTGGGCGATGGCTGCTCC
AAAAATCACGAGAGGATCGAAATAACAGGCAAGGCGAATGTTGGATATCA
GTTCGCGTTGTAGTAAGATAATGATATGGGTCTTAGCCAACTTGTTACAA
GAATGTGGAAACTGGCGGGGGAGAACACCCAGATCGGCTGCAAAGCGAAA
TGAGGCTTTCCGTACGCTTATGTGTGCCATTTTGTTCTTTGGCTTCTCTT
GGTAGAAGACACCGTGGCTCAATCATGTATAATTACTAAGAAATTGAAAT
TGATCGTGGCACGCGCTCACCACAGAGTCACATTGCTCGGATAAAAATAC
AAACACCACGGTTGCCATGACTTATGATACCGATACTGTAAATCATTATC
TAAACGTTTTCCAAATTTTCAAGCTCATTGTAAGATAAGCGCGCGACAGA
TTCACAGCACGTAGGGGGGCCTCGTGGGTGTTATTCGATGTTGTCTTGTG
CAAAATTCATTTTAATGTCATTTCGTGACTTTGACAAGACCTGTATTCCC
GCACCTTATTGCATGCAGAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACT
AAGGAGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCA
GAGAGTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCG
TCAAGCACGATTGAATTACATGTAGAGCCAAAGCCGGTTGAAAAGGTCCA
GATACTACATTTTATTATTTCTCACATAAGCTAATGTCAAATTCTAGCCC
GAAGCCCCAAAGTAGACGAGCCACCATCAGGAGAAAAAATTCAACGTATT
TTCCATTG back to topCoding sequence (CDS) from alignment at H-elongata_contig10177:2792..3699+ >mRNA_H-elongata_contig10177.153.1 ID=mRNA_H-elongata_contig10177.153.1|Name=mRNA_H-elongata_contig10177.153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig10177:2792..3699+ (Himanthalia elongata Himel1 dioecious)
ATGCCAGATAGAAGGAGCGTCGACGTCTCGGTGGGAATGATAGTCATCAA
AAGAGAATCGTGCTTGGGCGATGGCTGCTCCAAAAATCACGAGAGGATCG
AAATAACAGATGCCAGATAGAAGGAGCGTCGACGTCTCGGTGGGAATGAT
AGTCATCAAAAGAGAATCGTGCTTGGGCGATGGCTGCTCCAAAAATCACG
AGAGGATCGAAATAACAGAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACT
AAGGAGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCA
GAGAGTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCG
TCAAGCACGATTGAAGGCCGGAGCGGTGGTAGCGGGAGCTTTTACTAAGG
AGGAGGATAAATACCAGAGGGTGAGCGCTGGCTCGGTGAGGCGGCAGAGA
GTGCCAAGAAGGTCCAGCAACCTCAATGGTGCCGCCACGGTTGTCGTCAA
GCACGATTGA back to top
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