mRNA_H-elongata_contig10170.143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10170.143.1
Unique NamemRNA_H-elongata_contig10170.143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: D7FIM7_ECTSI (Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM7_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 3.040e-60
Identity = 93/125 (74.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            R +KT+HI+MDELDQLWVPE+KD+RLNER  GD IGKTKPEAE AFG ENV  WASSYDV P PMS +G YYP D RRY  V D +G   +PRTE MKDVSRRVVGYWE EIAP VRSGKRVLVA
Sbjct:   80 RVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPEAEEAFGKENVALWASSYDVAPHPMSTDGLYYPKDDRRYQHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVA 204          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A524M0E0_9SPIR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Fragment) n=1 Tax=Spirochaetales bacterium TaxID=2026792 RepID=A0A524M0E0_9SPIR)

HSP 1 Score: 125 bits (314), Expect = 1.310e-33
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            RA+KT HI +D +DQLW+PE+K WRLNER  G L G  K E    FG E V  W  SY  PP P++ +   YP    RY+D+A  +    +P TE +KD   R + YW ++IAP ++SGKRV++A
Sbjct:   60 RAIKTLHIALDVMDQLWIPEMKSWRLNERHYGALQGLNKAETAAKFGDEQVHIWRRSYATPPTPLTEDDERYPGHEARYADMAKAD----IPFTECLKDTVDRFLPYWHSDIAPTIKSGKRVIIA 180          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00201D1504 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. SE220 TaxID=2908209 RepID=UPI00201D1504)

HSP 1 Score: 125 bits (313), Expect = 2.970e-33
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            TRA++T H+++ ++D+LW+P  KDWRLNER  G L G  K E     G++ V+ W  SYD+PP  ++ +  Y     RRYSDVA       VPRTES+KD   R V Y+E EIAPA+ +GKRVLV+
Sbjct:   59 TRAIRTLHLVLHQMDRLWLPVTKDWRLNERHYGGLTGLNKQEMIDKVGADQVKIWRRSYDIPPPDLAEDSPYNVSGDRRYSDVA-------VPRTESLKDTIARAVPYYEKEIAPALHAGKRVLVS 177          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A1C4CP36_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chitinophaga costaii TaxID=1335309 RepID=A0A1C4CP36_9BACT)

HSP 1 Score: 124 bits (310), Expect = 1.380e-32
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            RA+KT  + +DE+DQLW+P VK W+LNER  G L G  K E    +G E V  W  SYD+PP  +      +P    RY+++A       +PR ES+KD  +RVV YWETEIAP VR+GK++++A
Sbjct:   60 RAIKTLDLCLDEMDQLWIPVVKSWKLNERHYGALQGLNKAETAHQYGEEQVHIWRRSYDIPPPALEPGDARFPGKDPRYANIAAAL----LPRYESLKDTVKRVVPYWETEIAPMVRAGKKIIIA 180          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A5C6UR05_9SPHN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingorhabdus soli TaxID=2601267 RepID=A0A5C6UR05_9SPHN)

HSP 1 Score: 121 bits (304), Expect = 6.690e-32
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            +TRA+KT H+ ++E+D+LW+PE KDW LNER  G L G  K +    +G E V  W  S+DVPP PM   G Y      RY+ +        VP++ES+KD   RV+ YWE+ IAP +++G+RVL++
Sbjct:   58 QTRAIKTLHLALEEMDRLWLPEEKDWHLNERHYGGLTGLDKQDTRDRYGDEQVHIWRRSFDVPPPPMEPGGPYDLSSDPRYAGI-------DVPQSESLKDTIARVLPYWESRIAPCLKAGERVLIS 177          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI0004907D1C (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. URHD0057 TaxID=1380389 RepID=UPI0004907D1C)

HSP 1 Score: 121 bits (303), Expect = 8.980e-32
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            TRA++T H+++ E+D+LW+P  KDWRLNER  G L G  K E     G   V+ W  SYD+PP P+  +  Y     RRY+ +        VPRTES+KD   R + Y+E EIAPA+++GKRVLVA
Sbjct:   59 TRAIRTLHLVLHEMDRLWLPVAKDWRLNERHYGGLTGLNKQEMIDKVGESQVKIWRRSYDIPPPPLPEDDPYDVSRDRRYAGIE-------VPRTESLKDTIARALPYYEAEIAPALKAGKRVLVA 177          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00109DF6A7 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas flavalba TaxID=2559804 RepID=UPI00109DF6A7)

HSP 1 Score: 121 bits (303), Expect = 9.690e-32
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            +TRA+KT ++ ++ + +LW+P  KDWRLNER  G L G  K E     G E V  W  S+DVPP PM A GR+     RRY+ VA       VP TES+KD   RV+ YW++ +APA+++G+RVL++
Sbjct:   58 QTRAIKTLNLALEAMGRLWLPVEKDWRLNERHYGGLTGLDKAETAAKHGDEQVRIWRRSFDVPPPPMEAGGRWDLSSDRRYAGVA-------VPATESLKDTIARVLPYWDSRVAPALKAGQRVLIS 177          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A177QTU9_9PROT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QTU9_9PROT)

HSP 1 Score: 121 bits (304), Expect = 1.040e-31
Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPM-SANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            RA++T  I +DELDQLW+P  KDWRLNER  G+L G  K E    FG + V  W  SYDVPP P+ +A+ R   +DPR Y+ +        VP TE +KD   RVV YWE+ I PA+RSGKRVLVA
Sbjct:   60 RAIRTLWIALDELDQLWLPVTKDWRLNERHYGNLQGLNKAEMAAKFGEKQVLVWRRSYDVPPDPLPAADPRSEANDPR-YAGIK-------VPATECLKDTVERVVPYWESAIVPAIRSGKRVLVA 177          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A7R9UUW0_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UUW0_DIALT)

HSP 1 Score: 120 bits (301), Expect = 2.660e-31
Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            RA+KT H+ ++E DQ++ P VK WRLNER  G L G  K E     G+E V+ W  S+D+PP P++ +  Y+P + R+Y D+ ++     VP TE +KD   RV+ +WE++I PA++ GK VLVA
Sbjct:   74 RAIKTLHLALEEADQMYAPVVKSWRLNERMYGALTGLDKKETVVKHGAEQVQVWRRSFDIPPPPLTKDSEYFPGNERKYKDLKESE----VPLTECLKDTVERVLPFWESDIVPALKEGKTVLVA 194          
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00181A1A74 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI00181A1A74)

HSP 1 Score: 120 bits (300), Expect = 2.660e-31
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381
            TRA++T H+ + ++D+LW+P  KDWRLNER  G L G  K E     G E V+ W  SYD+PP P+  +  Y     RRY+ V        VPRTES+KD   R V Y+E EIAPA+ +GKRVLV+
Sbjct:   59 TRAIRTLHLALYQMDRLWLPVTKDWRLNERHYGGLTGLNKQEMVEKVGGEQVKIWRRSYDIPPPPLPEDSPYDVAGDRRYTGV-------DVPRTESLKDTIARAVPYYEAEIAPALAAGKRVLVS 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM7_ECTSI3.040e-6074.40Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A524M0E0_9SPIR1.310e-3346.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
UPI00201D15042.970e-3348.412,3-diphosphoglycerate-dependent phosphoglycerate ... [more]
A0A1C4CP36_9BACT1.380e-3246.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A5C6UR05_9SPHN6.690e-3244.092,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
UPI0004907D1C8.980e-3246.832,3-diphosphoglycerate-dependent phosphoglycerate ... [more]
UPI00109DF6A79.690e-3245.672,3-diphosphoglycerate-dependent phosphoglycerate ... [more]
A0A177QTU9_9PROT1.040e-3152.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7R9UUW0_DIALT2.660e-3144.00Hypothetical protein (Fragment) n=2 Tax=Diacronema... [more]
UPI00181A1A742.660e-3147.622,3-diphosphoglycerate-dependent phosphoglycerate ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10170contigH-elongata_contig10170:363..1226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog2880.D7FIM7
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC5.4.2.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-27_000330.1
Exons2
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.263925-CDS-H-elongata_contig10170:362..6011622929556.263925-CDS-H-elongata_contig10170:362..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10170 363..601 +
1691679068.6641986-CDS-H-elongata_contig10170:362..6011691679068.6641986-CDS-H-elongata_contig10170:362..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10170 363..601 +
1622929556.284052-CDS-H-elongata_contig10170:1078..12261622929556.284052-CDS-H-elongata_contig10170:1078..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10170 1079..1226 +
1691679068.6854203-CDS-H-elongata_contig10170:1078..12261691679068.6854203-CDS-H-elongata_contig10170:1078..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10170 1079..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10170.143.1prot_H-elongata_contig10170.143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10170 363..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10170.143.1

>prot_H-elongata_contig10170.143.1 ID=prot_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGS
ENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMK
DVSRRVVGYWETEIAPAVRSGKRVLVAV*
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mRNA from alignment at H-elongata_contig10170:363..1226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10170.143.1 ID=mRNA_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig10170:363..1226+ (Himanthalia elongata Himel1 dioecious)
AAGACTAGAGCTGTCAAAACGCAACACATTATCATGGATGAGCTGGACCA ACTCTGGGTGCCCGAAGTGAAGGACTGGCGGCTGAACGAACGCCAGAACG GCGACCTCATCGGGAAGACGAAGCCGGAGGCGGAGCGGGCCTTTGGATCG GAAAATGTCGAGTTTTGGGCCTCGAGCTACGATGTGCCACCCGTACCCAT GAGCGCGAACGGGCGGTACTACCCCGATGACCCTAGAAGGTGTGGAGCTT GTATATACGACATCCATATCCGGGCGTTCAAAATTTATGGTTTACGTACA TAGCGCTCGGTGCAATCAAATTCACCGCATGGTAGGACATAGCCTTACCT GCCCCCCCCCCATCCAGTTTTAAAAGTGAACAAGAAAAGGAAATATCTTA AGTTCAAGTCTAGCGTTTATGCAGCAAGGGAGAAAGCCTGATTTGGAACT CCTTGTGAGCCGAGTGAGTTGTTGCTGTGTGCAGGAGCAGATAACACGGT CTGAGTGTATACCTTTGTCTCCTGGGGGTGTTGCGCTAGCTACGCTGAGC TGACGTATGTTTGGCGTTCTCTTCACCTGATCGATCGGGTATCACTGTTC TTGTATGAAATAGCATTGACGAATACATGGGGAGCAGAAACGGTGTCCAC CGTCTTCACACACCAGACGGGGTTGCTGGACGAATCCTGATATTTTTTTC TCGGTCCATGACGCAGGTACAGCGACGTGGCGGACACGAATGGGCTTCAT GGGGTTCCTAGGACGGAAAGCATGAAGGACGTCTCTCGTCGAGTGGTGGG CTACTGGGAGACGGAAATCGCCCCGGCTGTGCGAAGCGGCAAGCGCGTTC TAGTCGCGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig10170:363..1226+

>mRNA_H-elongata_contig10170.143.1 ID=mRNA_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig10170:363..1226+ (Himanthalia elongata Himel1 dioecious)
AAGACTAGAGCTGTCAAAACGCAACACATTATCATGGATGAGCTGGACCA
ACTCTGGGTGCCCGAAGTGAAGGACTGGCGGCTGAACGAACGCCAGAACG
GCGACCTCATCGGGAAGACGAAGCCGGAGGCGGAGCGGGCCTTTGGATCG
GAAAATGTCGAGTTTTGGGCCTCGAGCTACGATGTGCCACCCGTACCCAT
GAGCGCGAACGGGCGGTACTACCCCGATGACCCTAGAAGAAGACTAGAGC
TGTCAAAACGCAACACATTATCATGGATGAGCTGGACCAACTCTGGGTGC
CCGAAGTGAAGGACTGGCGGCTGAACGAACGCCAGAACGGCGACCTCATC
GGGAAGACGAAGCCGGAGGCGGAGCGGGCCTTTGGATCGGAAAATGTCGA
GTTTTGGGCCTCGAGCTACGATGTGCCACCCGTACCCATGAGCGCGAACG
GGCGGTACTACCCCGATGACCCTAGAAGGTACAGCGACGTGGCGGACACG
AATGGGCTTCATGGGGTTCCTAGGACGGAAAGCATGAAGGACGTCTCTCG
TCGAGTGGTGGGCTACTGGGAGACGGAAATCGCCCCGGCTGTGCGAAGCG
GCAAGCGCGTTCTAGTCGCGGTATGAGTACAGCGACGTGGCGGACACGAA
TGGGCTTCATGGGGTTCCTAGGACGGAAAGCATGAAGGACGTCTCTCGTC
GAGTGGTGGGCTACTGGGAGACGGAAATCGCCCCGGCTGTGCGAAGCGGC
AAGCGCGTTCTAGTCGCGGTATGA
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