mRNA_H-elongata_contig10170.143.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: D7FIM7_ECTSI (Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM7_ECTSI) HSP 1 Score: 195 bits (496), Expect = 3.040e-60 Identity = 93/125 (74.40%), Postives = 101/125 (80.80%), Query Frame = 1 Query: 7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 R +KT+HI+MDELDQLWVPE+KD+RLNER GD IGKTKPEAE AFG ENV WASSYDV P PMS +G YYP D RRY V D +G +PRTE MKDVSRRVVGYWE EIAP VRSGKRVLVA Sbjct: 80 RVLKTEHIVMDELDQLWVPEIKDYRLNERHYGDCIGKTKPEAEEAFGKENVALWASSYDVAPHPMSTDGLYYPKDDRRYQHVVDEDGACAIPRTECMKDVSRRVVGYWEEEIAPVVRSGKRVLVA 204
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A524M0E0_9SPIR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Fragment) n=1 Tax=Spirochaetales bacterium TaxID=2026792 RepID=A0A524M0E0_9SPIR) HSP 1 Score: 125 bits (314), Expect = 1.310e-33 Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 RA+KT HI +D +DQLW+PE+K WRLNER G L G K E FG E V W SY PP P++ + YP RY+D+A + +P TE +KD R + YW ++IAP ++SGKRV++A Sbjct: 60 RAIKTLHIALDVMDQLWIPEMKSWRLNERHYGALQGLNKAETAAKFGDEQVHIWRRSYATPPTPLTEDDERYPGHEARYADMAKAD----IPFTECLKDTVDRFLPYWHSDIAPTIKSGKRVIIA 180
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00201D1504 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. SE220 TaxID=2908209 RepID=UPI00201D1504) HSP 1 Score: 125 bits (313), Expect = 2.970e-33 Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 TRA++T H+++ ++D+LW+P KDWRLNER G L G K E G++ V+ W SYD+PP ++ + Y RRYSDVA VPRTES+KD R V Y+E EIAPA+ +GKRVLV+ Sbjct: 59 TRAIRTLHLVLHQMDRLWLPVTKDWRLNERHYGGLTGLNKQEMIDKVGADQVKIWRRSYDIPPPDLAEDSPYNVSGDRRYSDVA-------VPRTESLKDTIARAVPYYEKEIAPALHAGKRVLVS 177
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A1C4CP36_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chitinophaga costaii TaxID=1335309 RepID=A0A1C4CP36_9BACT) HSP 1 Score: 124 bits (310), Expect = 1.380e-32 Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1 Query: 7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 RA+KT + +DE+DQLW+P VK W+LNER G L G K E +G E V W SYD+PP + +P RY+++A +PR ES+KD +RVV YWETEIAP VR+GK++++A Sbjct: 60 RAIKTLDLCLDEMDQLWIPVVKSWKLNERHYGALQGLNKAETAHQYGEEQVHIWRRSYDIPPPALEPGDARFPGKDPRYANIAAAL----LPRYESLKDTVKRVVPYWETEIAPMVRAGKKIIIA 180
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A5C6UR05_9SPHN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingorhabdus soli TaxID=2601267 RepID=A0A5C6UR05_9SPHN) HSP 1 Score: 121 bits (304), Expect = 6.690e-32 Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 1 KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 +TRA+KT H+ ++E+D+LW+PE KDW LNER G L G K + +G E V W S+DVPP PM G Y RY+ + VP++ES+KD RV+ YWE+ IAP +++G+RVL++ Sbjct: 58 QTRAIKTLHLALEEMDRLWLPEEKDWHLNERHYGGLTGLDKQDTRDRYGDEQVHIWRRSFDVPPPPMEPGGPYDLSSDPRYAGI-------DVPQSESLKDTIARVLPYWESRIAPCLKAGERVLIS 177
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI0004907D1C (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. URHD0057 TaxID=1380389 RepID=UPI0004907D1C) HSP 1 Score: 121 bits (303), Expect = 8.980e-32 Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 TRA++T H+++ E+D+LW+P KDWRLNER G L G K E G V+ W SYD+PP P+ + Y RRY+ + VPRTES+KD R + Y+E EIAPA+++GKRVLVA Sbjct: 59 TRAIRTLHLVLHEMDRLWLPVAKDWRLNERHYGGLTGLNKQEMIDKVGESQVKIWRRSYDIPPPPLPEDDPYDVSRDRRYAGIE-------VPRTESLKDTIARALPYYEAEIAPALKAGKRVLVA 177
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00109DF6A7 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas flavalba TaxID=2559804 RepID=UPI00109DF6A7) HSP 1 Score: 121 bits (303), Expect = 9.690e-32 Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 1 KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 +TRA+KT ++ ++ + +LW+P KDWRLNER G L G K E G E V W S+DVPP PM A GR+ RRY+ VA VP TES+KD RV+ YW++ +APA+++G+RVL++ Sbjct: 58 QTRAIKTLNLALEAMGRLWLPVEKDWRLNERHYGGLTGLDKAETAAKHGDEQVRIWRRSFDVPPPPMEAGGRWDLSSDRRYAGVA-------VPATESLKDTIARVLPYWDSRVAPALKAGQRVLIS 177
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A177QTU9_9PROT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QTU9_9PROT) HSP 1 Score: 121 bits (304), Expect = 1.040e-31 Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPM-SANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 RA++T I +DELDQLW+P KDWRLNER G+L G K E FG + V W SYDVPP P+ +A+ R +DPR Y+ + VP TE +KD RVV YWE+ I PA+RSGKRVLVA Sbjct: 60 RAIRTLWIALDELDQLWLPVTKDWRLNERHYGNLQGLNKAEMAAKFGEKQVLVWRRSYDVPPDPLPAADPRSEANDPR-YAGIK-------VPATECLKDTVERVVPYWESAIVPAIRSGKRVLVA 177
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: A0A7R9UUW0_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UUW0_DIALT) HSP 1 Score: 120 bits (301), Expect = 2.660e-31 Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1 Query: 7 RAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 RA+KT H+ ++E DQ++ P VK WRLNER G L G K E G+E V+ W S+D+PP P++ + Y+P + R+Y D+ ++ VP TE +KD RV+ +WE++I PA++ GK VLVA Sbjct: 74 RAIKTLHLALEEADQMYAPVVKSWRLNERMYGALTGLDKKETVVKHGAEQVQVWRRSFDIPPPPLTKDSEYFPGNERKYKDLKESE----VPLTECLKDTVERVLPFWESDIVPALKEGKTVLVA 194
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Match: UPI00181A1A74 (2,3-diphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI00181A1A74) HSP 1 Score: 120 bits (300), Expect = 2.660e-31 Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 1 Query: 4 TRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSENVEFWASSYDVPPVPMSANGRYYPDDPRRYSDVADTNGLHGVPRTESMKDVSRRVVGYWETEIAPAVRSGKRVLVA 381 TRA++T H+ + ++D+LW+P KDWRLNER G L G K E G E V+ W SYD+PP P+ + Y RRY+ V VPRTES+KD R V Y+E EIAPA+ +GKRVLV+ Sbjct: 59 TRAIRTLHLALYQMDRLWLPVTKDWRLNERHYGGLTGLNKQEMVEKVGGEQVKIWRRSYDIPPPPLPEDSPYDVAGDRRYTGV-------DVPRTESLKDTIARAVPYYEAEIAPALAAGKRVLVS 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10170.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10170.143.1 >prot_H-elongata_contig10170.143.1 ID=prot_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp KTRAVKTQHIIMDELDQLWVPEVKDWRLNERQNGDLIGKTKPEAERAFGSback to top mRNA from alignment at H-elongata_contig10170:363..1226+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10170.143.1 ID=mRNA_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig10170:363..1226+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10170:363..1226+ >mRNA_H-elongata_contig10170.143.1 ID=mRNA_H-elongata_contig10170.143.1|Name=mRNA_H-elongata_contig10170.143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig10170:363..1226+ (Himanthalia elongata Himel1 dioecious)back to top |