mRNA_H-elongata_contig101617.138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101617.138.1
Unique NamemRNA_H-elongata_contig101617.138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.250e-19
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            MP++W++LAGGT GG IG+TVVYPLDT+KSRLQTSG ++YS   +VLTSM RKEG
Sbjct:    1 MPSLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSGRSRYSSISNVLTSMARKEG 55          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A482SIW2_9ARCH (Solute carrier family 25 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIW2_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 2.590e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   16 KDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            ++L  G VGG IGI++VYPLDT K RLQ      Y+G   V+  M+ ++G
Sbjct:    8 QELVAGNVGGLIGISIVYPLDTAKIRLQCHPSETYNGMFSVIRQMVDQDG 57          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A1D2NG81_ORCCI (Mitochondrial basic amino acids transporter n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NG81_ORCCI)

HSP 1 Score: 54.7 bits (130), Expect = 2.960e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   19 DLAGGTVGGAIGITVVYPLDTVKSRLQTSGPA--QYSGTMHVLTSMIRKE 162
            D   G VGGA G+ V +PLDTVK RLQT  P   +Y GT H L+++++KE
Sbjct:    4 DFLAGCVGGAAGVIVGHPLDTVKVRLQTQSPTNIKYRGTFHCLSTIVKKE 53          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A1D1UTA9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UTA9_RAMVA)

HSP 1 Score: 53.9 bits (128), Expect = 5.170e-7
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQ--YSGTMHVLTSMIRKE 162
            M  V  D   GT+GG  G+TV YPLD VK RLQT   A   Y+G +H L +M+++E
Sbjct:    1 MHPVLADFVAGTLGGCAGVTVGYPLDMVKVRLQTQSTAAPLYNGPVHCLKTMVKQE 56          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7S4B1I2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B1I2_CHRCT)

HSP 1 Score: 53.9 bits (128), Expect = 5.520e-7
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    7 TVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            TV + L  G+  GA+   V+YPL+  K+RL  S P  YSG +H L +++RKEG
Sbjct:  328 TVGERLVAGSAAGALAQAVIYPLEICKTRLAVSAPGIYSGIVHCLRTVVRKEG 380          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: F9WD27_TRYCI (WGS project CAEQ00000000 data, annotated contig 2312 n=2 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WD27_TRYCI)

HSP 1 Score: 52.8 bits (125), Expect = 1.280e-6
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   31 GTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            GTV GA G+ + YPLDTVK RLQT G  +YSG ++  T MIR+EG
Sbjct:   12 GTVSGAAGVLLEYPLDTVKVRLQTLG-TRYSGYINCATRMIREEG 55          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A316VDB4_9BASI (Mitochondrial carrier n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDB4_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 1.820e-6
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            + DL  G+V GA  + V  PLDT+K+R QTS P  + G M +L   +RKEG
Sbjct:   15 FTDLIAGSVAGASQVIVGQPLDTIKTRAQTSPPGMFRGPMDILMQTVRKEG 65          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7J6BZL2_9TELE (Uncharacterized protein n=4 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6BZL2_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 2.470e-6
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            + D   G+ GGA G+ V YPLDTVK R+QT    Q++G  H + S I+KEG
Sbjct:    3 FADFFAGSFGGACGVAVGYPLDTVKVRIQTQ--KQFTGIWHCIVSTIKKEG 51          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.600e-6
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            WK    G   G  G+TVVYPLDT K RLQT  P +Y G    L +++++EG
Sbjct:   50 WKRGVSGLTAGVSGLTVVYPLDTTKLRLQTC-PGEYKGAFDCLRTVVKREG 99          
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A498NSJ5_LABRO (Solute carrier family 25 member 47-A-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NSJ5_LABRO)

HSP 1 Score: 51.6 bits (122), Expect = 3.380e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165
            + D   G++GGA G+ V YPLDTVK R+QT    Q++G  + +T+ ++KEG
Sbjct:    3 FADFLAGSIGGACGVAVGYPLDTVKVRIQTQ--KQFTGIWNCITTTVKKEG 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE5.250e-1970.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SIW2_9ARCH2.590e-746.00Solute carrier family 25 protein n=1 Tax=archaeon ... [more]
A0A1D2NG81_ORCCI2.960e-752.00Mitochondrial basic amino acids transporter n=1 Ta... [more]
A0A1D1UTA9_RAMVA5.170e-748.21Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A7S4B1I2_CHRCT5.520e-745.28Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
F9WD27_TRYCI1.280e-660.00WGS project CAEQ00000000 data, annotated contig 23... [more]
A0A316VDB4_9BASI1.820e-647.06Mitochondrial carrier n=1 Tax=Meira miltonrushii T... [more]
A0A7J6BZL2_9TELE2.470e-649.02Uncharacterized protein n=4 Tax=Cyprinidae TaxID=7... [more]
A0A7S1G657_9STRA2.600e-647.06Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A498NSJ5_LABRO3.380e-645.10Solute carrier family 25 member 47-A-like protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101617contigH-elongata_contig101617:586..750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog3067.XP_002957905.1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015174,GO:0015179,GO:0015181,GO:0015189,GO:0015238,GO:0015318,GO:0015711,GO:0015802,GO:0015807,GO:0015809,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0089709,GO:0098655,GO:0098656,GO:1901474,GO:1902022,GO:1902475,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs34KHB@3041,37RYS@33090,KOG0758@1,KOG0758@2759,KOG0762@1,KOG0762@2759
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929555.674725-CDS-H-elongata_contig101617:585..7501622929555.674725-CDS-H-elongata_contig101617:585..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101617 586..750 +
1691679068.3539088-CDS-H-elongata_contig101617:585..7501691679068.3539088-CDS-H-elongata_contig101617:585..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101617 586..750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101617.138.1prot_H-elongata_contig101617.138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101617 586..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101617.138.1

>prot_H-elongata_contig101617.138.1 ID=prot_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSM
IRKEG
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mRNA from alignment at H-elongata_contig101617:586..750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101617.138.1 ID=mRNA_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig101617:586..750+ (Himanthalia elongata Himel1 dioecious)
ATGCCAACAGTTTGGAAGGATTTGGCTGGCGGAACGGTGGGCGGCGCGAT TGGAATTACCGTCGTGTACCCCCTGGACACCGTCAAATCGCGCCTCCAGA CATCCGGTCCGGCTCAGTATTCTGGCACGATGCACGTCTTGACGTCAATG ATACGGAAAGAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig101617:586..750+

>mRNA_H-elongata_contig101617.138.1 ID=mRNA_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig101617:586..750+ (Himanthalia elongata Himel1 dioecious)
ATGCCAACAGTTTGGAAGGATTTGGCTGGCGGAACGGTGGGCGGCGCGAT
TGGAATTACCGTCGTGTACCCCCTGGACACCGTCAAATCGCGCCTCCAGA
CATCCGGTCCGGCTCAGTATTCTGGCACGATGCACGTCTTGACGTCAATG
ATACGGAAAGAAGGGATGCCAACAGTTTGGAAGGATTTGGCTGGCGGAAC
GGTGGGCGGCGCGATTGGAATTACCGTCGTGTACCCCCTGGACACCGTCA
AATCGCGCCTCCAGACATCCGGTCCGGCTCAGTATTCTGGCACGATGCAC
GTCTTGACGTCAATGATACGGAAAGAAGGG
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