mRNA_H-elongata_contig101617.138.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 5.250e-19 Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 Query: 1 MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 MP++W++LAGGT GG IG+TVVYPLDT+KSRLQTSG ++YS +VLTSM RKEG Sbjct: 1 MPSLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSGRSRYSSISNVLTSMARKEG 55
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A482SIW2_9ARCH (Solute carrier family 25 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIW2_9ARCH) HSP 1 Score: 52.0 bits (123), Expect = 2.590e-7 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 Query: 16 KDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 ++L G VGG IGI++VYPLDT K RLQ Y+G V+ M+ ++G Sbjct: 8 QELVAGNVGGLIGISIVYPLDTAKIRLQCHPSETYNGMFSVIRQMVDQDG 57
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A1D2NG81_ORCCI (Mitochondrial basic amino acids transporter n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NG81_ORCCI) HSP 1 Score: 54.7 bits (130), Expect = 2.960e-7 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 Query: 19 DLAGGTVGGAIGITVVYPLDTVKSRLQTSGPA--QYSGTMHVLTSMIRKE 162 D G VGGA G+ V +PLDTVK RLQT P +Y GT H L+++++KE Sbjct: 4 DFLAGCVGGAAGVIVGHPLDTVKVRLQTQSPTNIKYRGTFHCLSTIVKKE 53
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A1D1UTA9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UTA9_RAMVA) HSP 1 Score: 53.9 bits (128), Expect = 5.170e-7 Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 1 Query: 1 MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQ--YSGTMHVLTSMIRKE 162 M V D GT+GG G+TV YPLD VK RLQT A Y+G +H L +M+++E Sbjct: 1 MHPVLADFVAGTLGGCAGVTVGYPLDMVKVRLQTQSTAAPLYNGPVHCLKTMVKQE 56
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7S4B1I2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B1I2_CHRCT) HSP 1 Score: 53.9 bits (128), Expect = 5.520e-7 Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1 Query: 7 TVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 TV + L G+ GA+ V+YPL+ K+RL S P YSG +H L +++RKEG Sbjct: 328 TVGERLVAGSAAGALAQAVIYPLEICKTRLAVSAPGIYSGIVHCLRTVVRKEG 380
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: F9WD27_TRYCI (WGS project CAEQ00000000 data, annotated contig 2312 n=2 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WD27_TRYCI) HSP 1 Score: 52.8 bits (125), Expect = 1.280e-6 Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 31 GTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 GTV GA G+ + YPLDTVK RLQT G +YSG ++ T MIR+EG Sbjct: 12 GTVSGAAGVLLEYPLDTVKVRLQTLG-TRYSGYINCATRMIREEG 55
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A316VDB4_9BASI (Mitochondrial carrier n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDB4_9BASI) HSP 1 Score: 52.4 bits (124), Expect = 1.820e-6 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 + DL G+V GA + V PLDT+K+R QTS P + G M +L +RKEG Sbjct: 15 FTDLIAGSVAGASQVIVGQPLDTIKTRAQTSPPGMFRGPMDILMQTVRKEG 65
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7J6BZL2_9TELE (Uncharacterized protein n=4 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6BZL2_9TELE) HSP 1 Score: 52.0 bits (123), Expect = 2.470e-6 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 + D G+ GGA G+ V YPLDTVK R+QT Q++G H + S I+KEG Sbjct: 3 FADFFAGSFGGACGVAVGYPLDTVKVRIQTQ--KQFTGIWHCIVSTIKKEG 51
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 2.600e-6 Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1 Query: 13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 WK G G G+TVVYPLDT K RLQT P +Y G L +++++EG Sbjct: 50 WKRGVSGLTAGVSGLTVVYPLDTTKLRLQTC-PGEYKGAFDCLRTVVKREG 99
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Match: A0A498NSJ5_LABRO (Solute carrier family 25 member 47-A-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NSJ5_LABRO) HSP 1 Score: 51.6 bits (122), Expect = 3.380e-6 Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 Query: 13 WKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMIRKEG 165 + D G++GGA G+ V YPLDTVK R+QT Q++G + +T+ ++KEG Sbjct: 3 FADFLAGSIGGACGVAVGYPLDTVKVRIQTQ--KQFTGIWNCITTTVKKEG 51 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101617.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101617.138.1 >prot_H-elongata_contig101617.138.1 ID=prot_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp MPTVWKDLAGGTVGGAIGITVVYPLDTVKSRLQTSGPAQYSGTMHVLTSMback to top mRNA from alignment at H-elongata_contig101617:586..750+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101617.138.1 ID=mRNA_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig101617:586..750+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101617:586..750+ >mRNA_H-elongata_contig101617.138.1 ID=mRNA_H-elongata_contig101617.138.1|Name=mRNA_H-elongata_contig101617.138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig101617:586..750+ (Himanthalia elongata Himel1 dioecious)back to top |