mRNA_H-elongata_contig101571.135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig101571.135.1
Unique Name	mRNA_H-elongata_contig101571.135.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.180e-58
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK 321
            DRLIDPTSVTNIFK+T+KIGCLMTGMIADSRVLVQRLRYEAHEFRFK GYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK
Sbjct:   56 DRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK 151

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A835YUN1_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.300e-47
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            DRLIDP SVTN+F+VT+++GCLMTGM AD+R  VQRLRYEAHEFRFK GYD P   LARR ADI QVYTQQAS+RALACVA+L+AVDDEKGPQ+FKV
Sbjct:   56 DRLIDPASVTNLFRVTDRVGCLMTGMTADARASVQRLRYEAHEFRFKYGYDVPVGTLARRFADICQVYTQQASLRALACVALLVAVDDEKGPQVFKV 152

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A7S2WQZ1_9STRA (Proteasome subunit alpha type n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQZ1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.350e-42
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            DRLIDP+SVT ++++TEKIGCLMTG+ AD RV V RLR EAHEF+F  GYD P HVLA+RIADI+QVYTQ+AS+R LAC  +L +VDDEKGPQLFK+
Sbjct:   57 DRLIDPSSVTYVYQITEKIGCLMTGLTADCRVQVTRLRQEAHEFKFNYGYDMPVHVLAKRIADISQVYTQEASLRMLACNVILSSVDDEKGPQLFKI 153

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: H3G9M2_PHYRM (Proteasome subunit alpha type n=26 Tax=Oomycota TaxID=4762 RepID=H3G9M2_PHYRM)

HSP 1 Score: 144 bits (363), Expect = 5.620e-41
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 1

Query:   31 QDRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            QD+LI+P SVTN+F++T +IGCLMTG+ ADS+  VQRLR+EAHEF  K GY  P HVLA+RIAD+AQVYTQ ASMRA   + ML++VD+EKGPQLFK+
Sbjct:   54 QDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLVSVDEEKGPQLFKI 151

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A067BYZ3_SAPPC (Proteasome subunit alpha type n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYZ3_SAPPC)

HSP 1 Score: 144 bits (363), Expect = 5.620e-41
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            D+LIDP SVTNIFK+T  IGCLMTG+ AD++  VQRLRYEAH+F  K GY  P HVLA+R+ADI+QVYTQ ASMRAL  V MLI+VD+EKGPQL+K+
Sbjct:   55 DKLIDPDSVTNIFKITPLIGCLMTGLYADAKAQVQRLRYEAHDFEHKYGYPVPCHVLAKRLADISQVYTQHASMRALGVVTMLISVDEEKGPQLYKI 151

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A7S2XVL7_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVL7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.620e-41
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            DRLIDP SVT++++V  KIGCLMTGM AD+RV+VQRLRYEA E+RFK+GYD P HVLARR+AD++QVYTQ A +RA+A   +L  VDDEKGP LF++
Sbjct:   57 DRLIDPESVTSLYQVNNKIGCLMTGMTADARVVVQRLRYEAAEYRFKHGYDVPVHVLARRLADLSQVYTQHAGIRAMAATTILAGVDDEKGPMLFRI 153

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: F0W2W5_9STRA (Proteasome subunit alpha type n=2 Tax=Albugo TaxID=65356 RepID=F0W2W5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.590e-40
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1

Query:   31 QDRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            QD+LIDP SVT+IF++T +IGCLMTGM AD++  VQRLRYEA+EF FK GY  P +VLA+R ADIAQVYTQ ASMRA   V MLI +DDEKGPQL+K+
Sbjct:   54 QDKLIDPESVTHIFQITAEIGCLMTGMYADAKAQVQRLRYEANEFAFKFGYSVPCYVLAKRAADIAQVYTQHASMRAFGVVTMLIGIDDEKGPQLYKI 151

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A6G0XHM2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHM2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.970e-40
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            D+LIDP SVTNIFK+T  IGCLMTG+ AD++  VQRLRYEAHEF  K GY  P HVLA+R+ADI+QVYTQ ASMRAL  V +LI +D+EKGPQLFK+
Sbjct:   63 DKLIDPDSVTNIFKITPAIGCLMTGLYADAKAQVQRLRYEAHEFENKFGYAVPVHVLAKRLADISQVYTQHASMRALGVVTILIGIDEEKGPQLFKI 159

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A4D9D8R2_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8R2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.620e-40
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 1

Query:   34 DRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            DRLIDP+SV+NI+++T+K+G +MTGM  DSR  V RLR EAHEFRFK GYD P HVLA+RIADIAQVYTQQASMRALA V ML+ VDDE+GPQL+KV
Sbjct:   82 DRLIDPSSVSNIYQITDKLGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKV 178

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BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Match: A0A2D4BD13_PYTIN (Proteasome subunit alpha type n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD13_PYTIN)

HSP 1 Score: 139 bits (349), Expect = 7.250e-39
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 1

Query:   31 QDRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRYEAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 324
            QD+LIDP SVT++F +T  IG L+TG+ AD+R  VQRLRYEAH+F  K GY  P HVLA+RIAD+AQVYTQ ASMRA   +  LI+VDDEKGPQLFKV
Sbjct:   54 QDKLIDPDSVTSVFPITPSIGALVTGLPADARAQVQRLRYEAHDFEHKYGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITFLISVDDEKGPQLFKV 151

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot

BLAST of mRNA_H-elongata_contig101571.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FPB2_ECTSI	1.180e-58	96.88	Proteasome subunit alpha type n=1 Tax=Ectocarpus s...	[more]
A0A835YUN1_9STRA	1.300e-47	78.35	Proteasome subunit alpha type n=1 Tax=Tribonema mi...	[more]
A0A7S2WQZ1_9STRA	5.350e-42	71.13	Proteasome subunit alpha type n=2 Tax=Rhizochromul...	[more]
H3G9M2_PHYRM	5.620e-41	67.35	Proteasome subunit alpha type n=26 Tax=Oomycota Ta...	[more]
A0A067BYZ3_SAPPC	5.620e-41	70.10	Proteasome subunit alpha type n=4 Tax=Saprolegniac...	[more]
A0A7S2XVL7_9STRA	8.620e-41	68.04	Proteasome subunit alpha type n=1 Tax=Fibrocapsa j...	[more]
F0W2W5_9STRA	1.590e-40	69.39	Proteasome subunit alpha type n=2 Tax=Albugo TaxID...	[more]
A0A6G0XHM2_9STRA	1.970e-40	70.10	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A4D9D8R2_9STRA	3.620e-40	74.23	PROTEASOME_ALPHA_1 domain-containing protein n=1 T...	[more]
A0A2D4BD13_PYTIN	7.250e-39	67.35	Proteasome subunit alpha type n=1 Tax=Pythium insi...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	192.2
Seed ortholog evalue	1.3e-46
Seed eggNOG ortholog	2880.D7FPB2
Preferred name	PSMA6
KEGG ko	ko:K02730
KEGG Pathway	ko03050,map03050
KEGG Module	M00337,M00340
GOs	GO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.	threonine-type endopeptidase activity
EggNOG OGs	COG0638@1,KOG0182@2759
EC	3.4.25.1
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Nucleophile aminohydrolases, N-terminal
Ec32 ortholog	Ec-15_004060.2
Exons	2
Model size	324
Cds size	324
Stop	0
Start	1

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig101571:1247..2264+
coding sequence from alignment at H-elongata_contig101571:1247..2264+

protein sequence of mRNA_H-elongata_contig101571.135.1

>prot_H-elongata_contig101571.135.1 ID=prot_H-elongata_contig101571.135.1|Name=mRNA_H-elongata_contig101571.135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MIFVFIFAFCQDRLIDPTSVTNIFKVTEKIGCLMTGMIADSRVLVQRLRY
EAHEFRFKNGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDE
KGPQLFKV

mRNA from alignment at H-elongata_contig101571:1247..2264+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig101571.135.1 ID=mRNA_H-elongata_contig101571.135.1|Name=mRNA_H-elongata_contig101571.135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-elongata_contig101571:1247..2264+ (Himanthalia elongata Himel1 dioecious)
ATGATTTTTGTTTTTATTTTTGCTTTTTGTCAGGATCGGCTGATCGACCC
GACCTCAGTGACGAACATTTTCAAGGTTACCGAGAAGATCGGTTGCCTCA
TGACGGGCATGATAGGTGAGAAGAAAAGAAAGGGGATTGATCGATCGATC
GATGGTGATGAAAGCAAGGTTGCGCTCAATGGGATATTTTGTCTGGCCGT
GTTTCGACGCTCAATGCTCGTGGGCGACGGGGAGAGAGTAGGGGATATAT
GTCGGAAGACGGGTTTACGCTCCGTGGAAGGTGCCGTCCTACGCCGTGTA
CGAAGGCAAGCCCACGATTCAAGCTCTTGTCGCGATGTGGGTGGATGGGG
ATTGGAAAAAAAGAATGTGGAAGGGAATGTATTCGAAGAAGAGAGAGCAG
AGCACCCACCCTCCCCCCTGGCCTTTTTATTCATGGTGATCCTACTGATA
TCATGGCGTGTGTCCCGCCTTCCATCTCGTACAACTCCCAATACCTTCTG
CTCTCCATGCTCGGGCGGTTTTTTGGGGGGGTTTTCTCTCCCGTCGCAGT
GGATATGATACTAAAAGAGCTTCTGGTAATTTTTATACTACCGGATGCCA
AGGTCACAAACGAACTGCGTTACCTTCGGCGCCATCTTTCGGTCGACGAT
TATTTTCACCAATTTCATGGGTAATGACCAGTCCCTCGCCCTTCTCCCCG
CCCGCCCGCCCGCCCCCCTGTGATCCCTCCTTATCTTTATGTGCCCTCTT
TGGCGCCGTTGGGGTGGTCTCTCCCGTGTCTACTGGCGTCCTCTGACGGA
AAATTCCAGCCGACTCAAGGGTGCTGGTGCAGCGGCTGCGGTACGAGGCC
CACGAGTTTCGCTTCAAGAACGGGTACGACTGTCCCGCGCATGTGCTGGC
CCGGCGCATCGCCGACATCGCGCAGGTTTACACGCAGCAGGCGTCAATGC
GCGCGCTGGCGTGCGTCGCCATGCTGATCGCGGTGGACGACGAGAAGGGC
CCACAGCTCTTCAAGGTA

Coding sequence (CDS) from alignment at H-elongata_contig101571:1247..2264+

>mRNA_H-elongata_contig101571.135.1 ID=mRNA_H-elongata_contig101571.135.1|Name=mRNA_H-elongata_contig101571.135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig101571:1247..2264+ (Himanthalia elongata Himel1 dioecious)
ATGATTTTTGTTTTTATTTTTGCTTTTTGTCAGGATCGGCTGATCGACCC
GACCTCAGTGACGAACATTTTCAAGGTTACCGAGAAGATCGGTTGCCTCA
TGACGGGCATGATAGATGATTTTTGTTTTTATTTTTGCTTTTTGTCAGGA
TCGGCTGATCGACCCGACCTCAGTGACGAACATTTTCAAGGTTACCGAGA
AGATCGGTTGCCTCATGACGGGCATGATAGCCGACTCAAGGGTGCTGGTG
CAGCGGCTGCGGTACGAGGCCCACGAGTTTCGCTTCAAGAACGGGTACGA
CTGTCCCGCGCATGTGCTGGCCCGGCGCATCGCCGACATCGCGCAGGTTT
ACACGCAGCAGGCGTCAATGCGCGCGCTGGCGTGCGTCGCCATGCTGATC
GCGGTGGACGACGAGAAGGGCCCACAGCTCTTCAAGGTACCGACTCAAGG
GTGCTGGTGCAGCGGCTGCGGTACGAGGCCCACGAGTTTCGCTTCAAGAA
CGGGTACGACTGTCCCGCGCATGTGCTGGCCCGGCGCATCGCCGACATCG
CGCAGGTTTACACGCAGCAGGCGTCAATGCGCGCGCTGGCGTGCGTCGCC
ATGCTGATCGCGGTGGACGACGAGAAGGGCCCACAGCTCTTCAAGGTA