mRNA_H-elongata_contig101493.131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101493.131.1
Unique NamemRNA_H-elongata_contig101493.131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-16
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:  104 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 193
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.950e-16
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:   40 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 129
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.260e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:  247 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 336
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.340e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:  500 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 589
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.360e-15
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+  A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E++K  ++P RE VG++MW +T +RP +++A+
Sbjct:  551 KNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAV 640
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.380e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:  960 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1049
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct: 1339 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1428
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct: 1359 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1448
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-15
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE +++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct: 1502 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1591
[Close]
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.890e-15
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
            K++GE  ++ GC I R+ +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E+E+  ++P RE +G++MW +T +RP +++A+
Sbjct:  897 KNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 986
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE1.400e-1640.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE2.950e-1640.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.260e-1540.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE1.340e-1540.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE1.360e-1541.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.380e-1540.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.390e-1540.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.390e-1540.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.400e-1540.21Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JRE9_9PHAE1.890e-1540.21Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101493contigH-elongata_contig101493:59..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2711.XP_006471604.1
KEGG rclassRC00478,RC00661
KEGG koko:K04125
KEGG ReactionR03008,R03809,R06337,R06338
KEGG Pathwayko00904,ko01110,map00904,map01110
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009685,GO:0009987,GO:0010817,GO:0016042,GO:0016054,GO:0016101,GO:0016103,GO:0016115,GO:0016491,GO:0016705,GO:0016706,GO:0019752,GO:0042445,GO:0042447,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045487,GO:0045543,GO:0046395,GO:0050896,GO:0051213,GO:0052634,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGs37R49@33090,3G77N@35493,COG2801@1,COG3491@1,KOG0017@2759,KOG0143@2759
EC1.14.11.13
COG Functional cat.Q
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.4669533-UTR-H-elongata_contig101493:58..641622929554.4669533-UTR-H-elongata_contig101493:58..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101493 59..64 +
1691679067.7588267-UTR-H-elongata_contig101493:58..641691679067.7588267-UTR-H-elongata_contig101493:58..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101493 59..64 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.4832625-CDS-H-elongata_contig101493:64..3491622929554.4832625-CDS-H-elongata_contig101493:64..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101493 65..349 +
1691679067.7693183-CDS-H-elongata_contig101493:64..3491691679067.7693183-CDS-H-elongata_contig101493:64..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101493 65..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101493.131.1prot_H-elongata_contig101493.131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101493 65..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101493.131.1

>prot_H-elongata_contig101493.131.1 ID=prot_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGV
PTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL
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mRNA from alignment at H-elongata_contig101493:59..349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101493.131.1 ID=mRNA_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig101493:59..349+ (Himanthalia elongata Himel1 dioecious)
AAGGACATGGGTGAGGCCAGGTACTATATGGGCTGTCACATTACTAGGAA
CCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGA
TGGTGGAAACGTTCGACGTCAAGAAGGAAAGCAAGATACCGGCTACGTCG
GGGGTGCCAACAGCCTCAAAGGCGGACGAGCCGTGGAACCCGGAGGAAAA
TGAGAAAATGAGGAAGTTCCCGTACCGGGAAACAGTGGGGGCGCTTATGT
GGACGGCGACGATGACACGGCCGTACATTGCGTACGCGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig101493:59..349+

>mRNA_H-elongata_contig101493.131.1 ID=mRNA_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig101493:59..349+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGAGGCCAGGTACTATATGGGCTGTCACATTACTAGGAACCGCAA
GGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGG
AAACGTTCGACGTCAAGAAGGAAAGCAAGATACCGGCTACGTCGGGGGTG
CCAACAGCCTCAAAGGCGGACGAGCCGTGGAACCCGGAGGAAAATGAGAA
AATGAGGAAGTTCCCGTACCGGGAAACAGTGGGGGCGCTTATGTGGACGG
CGACGATGACACGGCCGTACATTGCGTACGCGCTGATGGGTGAGGCCAGG
TACTATATGGGCTGTCACATTACTAGGAACCGCAAGGCGCGCGAGCTGAA
GATCGACCAACACTTGTACGTGGAGTCGATGGTGGAAACGTTCGACGTCA
AGAAGGAAAGCAAGATACCGGCTACGTCGGGGGTGCCAACAGCCTCAAAG
GCGGACGAGCCGTGGAACCCGGAGGAAAATGAGAAAATGAGGAAGTTCCC
GTACCGGGAAACAGTGGGGGCGCTTATGTGGACGGCGACGATGACACGGC
CGTACATTGCGTACGCGCTG
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