mRNA_H-elongata_contig101493.131.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.400e-16 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 104 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 193
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.950e-16 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 40 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 129
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.260e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 247 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 336
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.340e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 500 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 589
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.360e-15 Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ A L+I Q Y++SMVE FDVK S+IPAT G K E++K ++P RE VG++MW +T +RP +++A+
Sbjct: 551 KNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAV 640
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.380e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 960 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1049
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.390e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 1339 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1428
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.390e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 1359 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1448
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.400e-15 Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE +++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 1502 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1591
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.890e-15 Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 1 Query: 1 KDMGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVPTASKADEPWNPEENEKMRKFPYRETVGALMWTATMTRPYIAYAL 291
K++GE ++ GC I R+ +A L+I Q Y++SMVE FDVK S+IPAT G K E+E+ ++P RE +G++MW +T +RP +++A+
Sbjct: 897 KNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 986 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101493.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101493.131.1 >prot_H-elongata_contig101493.131.1 ID=prot_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp MGEARYYMGCHITRNRKARELKIDQHLYVESMVETFDVKKESKIPATSGVback to top mRNA from alignment at H-elongata_contig101493:59..349+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101493.131.1 ID=mRNA_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig101493:59..349+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101493:59..349+ >mRNA_H-elongata_contig101493.131.1 ID=mRNA_H-elongata_contig101493.131.1|Name=mRNA_H-elongata_contig101493.131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig101493:59..349+ (Himanthalia elongata Himel1 dioecious)back to top |