mRNA_H-elongata_contig101472.129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101472.129.1
Unique NamemRNA_H-elongata_contig101472.129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101472.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101472contigH-elongata_contig101472:1156..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size487
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101472.129.1prot_H-elongata_contig101472.129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101472 1295..1658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.2412322-UTR-H-elongata_contig101472:1155..12941622929554.2412322-UTR-H-elongata_contig101472:1155..1294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101472 1156..1294 -
1691679067.600125-UTR-H-elongata_contig101472:1155..12941691679067.600125-UTR-H-elongata_contig101472:1155..1294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101472 1156..1294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.2527657-CDS-H-elongata_contig101472:1294..13751622929554.2527657-CDS-H-elongata_contig101472:1294..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101472 1295..1375 -
1691679067.6089616-CDS-H-elongata_contig101472:1294..13751691679067.6089616-CDS-H-elongata_contig101472:1294..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101472 1295..1375 -
1622929554.2649722-CDS-H-elongata_contig101472:1391..16581622929554.2649722-CDS-H-elongata_contig101472:1391..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101472 1392..1658 -
1691679067.6183488-CDS-H-elongata_contig101472:1391..16581691679067.6183488-CDS-H-elongata_contig101472:1391..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101472 1392..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101472.129.1

>prot_H-elongata_contig101472.129.1 ID=prot_H-elongata_contig101472.129.1|Name=mRNA_H-elongata_contig101472.129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
GCFRGRPRTRFALGLCSPFTCPTLKAASEALVAEKCLLPVAPFAAPLPSC
AAAAAVAATTFVSAPSPRLGFLSLSLSLAPAFLPRSMWSRPHSLVLCRSF
DVWPWATGCHHGFPC*
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mRNA from alignment at H-elongata_contig101472:1156..1658-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101472.129.1 ID=mRNA_H-elongata_contig101472.129.1|Name=mRNA_H-elongata_contig101472.129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig101472:1156..1658- (Himanthalia elongata Himel1 dioecious)
GGCTGCTTCCGGGGACGGCCTCGAACGCGTTTCGCCTTGGGCTTGTGTTC
ACCTTTCACCTGCCCCACGCTAAAGGCTGCATCCGAGGCGCTAGTGGCTG
AAAAATGCTTACTCCCTGTAGCTCCCTTCGCAGCGCCCCTTCCCAGCTGC
GCGGCAGCAGCAGCAGTAGCTGCTACGACGTTTGTATCCGCACCCTCTCC
CAGATTAGGATTCCTTTCCTTATCCCTCTCCTTAGCCCCAGCCTTCCTCC
CTCGCTCAATGTGGTCTGTTTGCCTCGCAGCAGCGCCCTCATTCTCTCGT
GCTTTGTCGTTCGTTTGACGTTTGGCCCTGGGCGACCGGTTGCCACCACG
GCTTCCCTTGTTAGATCGAGCATCTTGCTTCATGCGCCTGCAATTTTCAA
TTTTCGAATCCGTGAAGACTGAGCGTGTGGTTGAATGAGGCAGGCGTGCC
TCCCTAAAAGCTGTGGAGCTCGAGTACGAACCTCACCAGAGACACCTATT
TTT
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Coding sequence (CDS) from alignment at H-elongata_contig101472:1156..1658-

>mRNA_H-elongata_contig101472.129.1 ID=mRNA_H-elongata_contig101472.129.1|Name=mRNA_H-elongata_contig101472.129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig101472:1156..1658- (Himanthalia elongata Himel1 dioecious)
GGCTGCTTCCGGGGACGGCCTCGAACGCGTTTCGCCTTGGGCTTGTGTTC
ACCTTTCACCTGCCCCACGCTAAAGGCTGCATCCGAGGCGCTAGTGGCTG
AAAAATGCTTACTCCCTGTAGCTCCCTTCGCAGCGCCCCTTCCCAGCTGC
GCGGCAGCAGCAGCAGTAGCTGCTACGACGTTTGTATCCGCACCCTCTCC
CAGATTAGGATTCCTTTCCTTATCCCTCTCCTTAGCCCCAGCCTTCCTCC
CTCGCTCAATGTGGTCTGGCTGCTTCCGGGGACGGCCTCGAACGCGTTTC
GCCTTGGGCTTGTGTTCACCTTTCACCTGCCCCACGCTAAAGGCTGCATC
CGAGGCGCTAGTGGCTGAAAAATGCTTACTCCCTGTAGCTCCCTTCGCAG
CGCCCCTTCCCAGCTGCGCGGCAGCAGCAGCAGTAGCTGCTACGACGTTT
GTATCCGCACCCTCTCCCAGATTAGGATTCCTTTCCTTATCCCTCTCCTT
AGCCCCAGCCTTCCTCCCTCGCTCAATGTGGTCTCGCCCTCATTCTCTCG
TGCTTTGTCGTTCGTTTGACGTTTGGCCCTGGGCGACCGGTTGCCACCAC
GGCTTCCCTTGTTAGCGCCCTCATTCTCTCGTGCTTTGTCGTTCGTTTGA
CGTTTGGCCCTGGGCGACCGGTTGCCACCACGGCTTCCCTTGTTAG
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