mRNA_H-elongata_contig101408.125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101408.125.1
Unique NamemRNA_H-elongata_contig101408.125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101408.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101408contigH-elongata_contig101408:858..1938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1083
Cds size969
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.8729575-UTR-H-elongata_contig101408:857..9691622929553.8729575-UTR-H-elongata_contig101408:857..969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101408 858..969 +
1691679067.4360666-UTR-H-elongata_contig101408:857..9691691679067.4360666-UTR-H-elongata_contig101408:857..969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101408 858..969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.896404-CDS-H-elongata_contig101408:969..19381622929553.896404-CDS-H-elongata_contig101408:969..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101408 970..1938 +
1691679067.449343-CDS-H-elongata_contig101408:969..19381691679067.449343-CDS-H-elongata_contig101408:969..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101408 970..1938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101408.125.1prot_H-elongata_contig101408.125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101408 970..1938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101408.125.1

>prot_H-elongata_contig101408.125.1 ID=prot_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp
MTNVIIKKLAIDTCDEDPTCGMSGSKQAQYCADHALEGTVYCVKKECGGD
ESFKEPSYGVACQKNPDYLAEHSLVRIAKVNIKIYVGDDCSTVSSYRKAG
SKKREYLAYSDVEELVNIVNDKCADDGCSKVPMYGMVGSKNREYCAKHAL
EGMVHIAKKTCAGDGGVVGSKKREYCAKHALQGMFDIVNKTCAGNGCFKH
LNHGVVGSKRRKYCSKHSLKGMVDIAHKTCARDGCLKRPNFGVVGSRKRE
YCAKHALHGMVNIANKTCAGDGCLKYPCYGMVDSKKREYCAKHALDGMVN
IANKTCAGDGCLKYPSYGMVGSK
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mRNA from alignment at H-elongata_contig101408:858..1938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101408.125.1 ID=mRNA_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig101408:858..1938+ (Himanthalia elongata Himel1 dioecious)
AGGTATTCGATACCCGTATAGAGCAACGGAGCGCTTATTGCCGAGGGTTT
GTGCAAGCGGGGTGGTCGGGAGCGGTTAGACGAAGTATTACGCCGAGCAA
GCATGAAGGGCAATGACCAACGTTATTATTAAGAAGCTTGCCATCGATAC
ATGCGATGAGGACCCGACGTGCGGAATGTCCGGTAGCAAACAGGCGCAAT
ACTGCGCCGACCATGCCTTAGAGGGCACGGTCTACTGTGTGAAAAAAGAA
TGTGGCGGTGATGAATCCTTTAAGGAACCAAGCTACGGCGTCGCATGCCA
GAAAAATCCTGACTACCTCGCTGAGCATTCTTTGGTAAGGATCGCCAAAG
TGAATATAAAAATTTATGTGGGTGATGACTGCTCTACGGTATCAAGCTAC
CGGAAGGCCGGCAGTAAAAAGCGGGAATATTTGGCTTATAGTGACGTCGA
GGAGTTGGTCAACATTGTGAATGACAAGTGTGCTGATGATGGGTGCTCGA
AGGTACCAATGTACGGTATGGTCGGCAGTAAGAACCGGGAGTACTGTGCT
AAGCATGCTTTAGAGGGAATGGTTCACATTGCAAAGAAAACGTGTGCGGG
CGATGGAGGTGTGGTCGGCAGTAAGAAGCGGGAGTACTGCGCTAAGCATG
CCTTGCAGGGAATGTTTGACATTGTAAACAAAACATGTGCGGGCAATGGA
TGTTTTAAGCATCTAAATCACGGTGTGGTCGGCAGTAAGAGGCGCAAGTA
CTGCTCTAAGCATTCCTTGAAGGGAATGGTTGATATTGCGCACAAAACGT
GCGCGAGGGATGGATGCTTAAAGCGTCCAAATTTTGGTGTGGTCGGCAGT
AGGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCATGGGATGGTTAATAT
TGCAAACAAAACGTGTGCGGGCGATGGATGCTTGAAATATCCATGTTATG
GTATGGTCGACAGTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGGAT
GGGATGGTTAATATTGCAAACAAAACGTGTGCGGGGGATGGATGCTTGAA
ATATCCAAGTTACGGTATGGTCGGCAGTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig101408:858..1938+

>mRNA_H-elongata_contig101408.125.1 ID=mRNA_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig101408:858..1938+ (Himanthalia elongata Himel1 dioecious)
ATGACCAACGTTATTATTAAGAAGCTTGCCATCGATACATGCGATGAGGA
CCCGACGTGCGGAATGTCCGGTAGCAAACAGGCGCAATACTGCGCCGACC
ATGCCTTAGAGGGCACGGTCTACTGTGTGAAAAAAGAATGTGGCGGTGAT
GAATCCTTTAAGGAACCAAGCTACGGCGTCGCATGCCAGAAAAATCCTGA
CTACCTCGCTGAGCATTCTTTGGTAAGGATCGCCAAAGTGAATATAAAAA
TTTATGTGGGTGATGACTGCTCTACGGTATCAAGCTACCGGAAGGCCGGC
AGTAAAAAGCGGGAATATTTGGCTTATAGTGACGTCGAGGAGTTGGTCAA
CATTGTGAATGACAAGTGTGCTGATGATGGGTGCTCGAAGGTACCAATGT
ACGGTATGGTCGGCAGTAAGAACCGGGAGTACTGTGCTAAGCATGCTTTA
GAGGGAATGGTTCACATTGCAAAGAAAACGTGTGCGGGCGATGGAGGTGT
GGTCGGCAGTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCAGGGAA
TGTTTGACATTGTAAACAAAACATGTGCGGGCAATGGATGTTTTAAGCAT
CTAAATCACGGTGTGGTCGGCAGTAAGAGGCGCAAGTACTGCTCTAAGCA
TTCCTTGAAGGGAATGGTTGATATTGCGCACAAAACGTGCGCGAGGGATG
GATGCTTAAAGCGTCCAAATTTTGGTGTGGTCGGCAGTAGGAAGCGGGAG
TACTGCGCTAAGCATGCCTTGCATGGGATGGTTAATATTGCAAACAAAAC
GTGTGCGGGCGATGGATGCTTGAAATATCCATGTTATGGTATGGTCGACA
GTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGGATGGGATGGTTAAT
ATTGCAAACAAAACGTGTGCGGGGGATGGATGCTTGAAATATCCAAGTTA
CGGTATGGTCGGCAGTAAGATGACCAACGTTATTATTAAGAAGCTTGCCA
TCGATACATGCGATGAGGACCCGACGTGCGGAATGTCCGGTAGCAAACAG
GCGCAATACTGCGCCGACCATGCCTTAGAGGGCACGGTCTACTGTGTGAA
AAAAGAATGTGGCGGTGATGAATCCTTTAAGGAACCAAGCTACGGCGTCG
CATGCCAGAAAAATCCTGACTACCTCGCTGAGCATTCTTTGGTAAGGATC
GCCAAAGTGAATATAAAAATTTATGTGGGTGATGACTGCTCTACGGTATC
AAGCTACCGGAAGGCCGGCAGTAAAAAGCGGGAATATTTGGCTTATAGTG
ACGTCGAGGAGTTGGTCAACATTGTGAATGACAAGTGTGCTGATGATGGG
TGCTCGAAGGTACCAATGTACGGTATGGTCGGCAGTAAGAACCGGGAGTA
CTGTGCTAAGCATGCTTTAGAGGGAATGGTTCACATTGCAAAGAAAACGT
GTGCGGGCGATGGAGGTGTGGTCGGCAGTAAGAAGCGGGAGTACTGCGCT
AAGCATGCCTTGCAGGGAATGTTTGACATTGTAAACAAAACATGTGCGGG
CAATGGATGTTTTAAGCATCTAAATCACGGTGTGGTCGGCAGTAAGAGGC
GCAAGTACTGCTCTAAGCATTCCTTGAAGGGAATGGTTGATATTGCGCAC
AAAACGTGCGCGAGGGATGGATGCTTAAAGCGTCCAAATTTTGGTGTGGT
CGGCAGTAGGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCATGGGATGG
TTAATATTGCAAACAAAACGTGTGCGGGCGATGGATGCTTGAAATATCCA
TGTTATGGTATGGTCGACAGTAAGAAGCGGGAGTACTGCGCTAAGCATGC
CTTGGATGGGATGGTTAATATTGCAAACAAAACGTGTGCGGGGGATGGAT
GCTTGAAATATCCAAGTTACGGTATGGTCGGCAGTAAG
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