Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 1083 |
Cds size | 969 |
Stop | 0 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929553.8729575-UTR-H-elongata_contig101408:857..969 | 1622929553.8729575-UTR-H-elongata_contig101408:857..969 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig101408 858..969 + |
1691679067.4360666-UTR-H-elongata_contig101408:857..969 | 1691679067.4360666-UTR-H-elongata_contig101408:857..969 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig101408 858..969 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929553.896404-CDS-H-elongata_contig101408:969..1938 | 1622929553.896404-CDS-H-elongata_contig101408:969..1938 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101408 970..1938 + |
1691679067.449343-CDS-H-elongata_contig101408:969..1938 | 1691679067.449343-CDS-H-elongata_contig101408:969..1938 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101408 970..1938 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101408.125.1 >prot_H-elongata_contig101408.125.1 ID=prot_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp
MTNVIIKKLAIDTCDEDPTCGMSGSKQAQYCADHALEGTVYCVKKECGGD ESFKEPSYGVACQKNPDYLAEHSLVRIAKVNIKIYVGDDCSTVSSYRKAG SKKREYLAYSDVEELVNIVNDKCADDGCSKVPMYGMVGSKNREYCAKHAL EGMVHIAKKTCAGDGGVVGSKKREYCAKHALQGMFDIVNKTCAGNGCFKH LNHGVVGSKRRKYCSKHSLKGMVDIAHKTCARDGCLKRPNFGVVGSRKRE YCAKHALHGMVNIANKTCAGDGCLKYPCYGMVDSKKREYCAKHALDGMVN IANKTCAGDGCLKYPSYGMVGSK back to topmRNA from alignment at H-elongata_contig101408:858..1938+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig101408.125.1 ID=mRNA_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig101408:858..1938+ (Himanthalia elongata Himel1 dioecious) AGGTATTCGATACCCGTATAGAGCAACGGAGCGCTTATTGCCGAGGGTTT
GTGCAAGCGGGGTGGTCGGGAGCGGTTAGACGAAGTATTACGCCGAGCAA
GCATGAAGGGCAATGACCAACGTTATTATTAAGAAGCTTGCCATCGATAC
ATGCGATGAGGACCCGACGTGCGGAATGTCCGGTAGCAAACAGGCGCAAT
ACTGCGCCGACCATGCCTTAGAGGGCACGGTCTACTGTGTGAAAAAAGAA
TGTGGCGGTGATGAATCCTTTAAGGAACCAAGCTACGGCGTCGCATGCCA
GAAAAATCCTGACTACCTCGCTGAGCATTCTTTGGTAAGGATCGCCAAAG
TGAATATAAAAATTTATGTGGGTGATGACTGCTCTACGGTATCAAGCTAC
CGGAAGGCCGGCAGTAAAAAGCGGGAATATTTGGCTTATAGTGACGTCGA
GGAGTTGGTCAACATTGTGAATGACAAGTGTGCTGATGATGGGTGCTCGA
AGGTACCAATGTACGGTATGGTCGGCAGTAAGAACCGGGAGTACTGTGCT
AAGCATGCTTTAGAGGGAATGGTTCACATTGCAAAGAAAACGTGTGCGGG
CGATGGAGGTGTGGTCGGCAGTAAGAAGCGGGAGTACTGCGCTAAGCATG
CCTTGCAGGGAATGTTTGACATTGTAAACAAAACATGTGCGGGCAATGGA
TGTTTTAAGCATCTAAATCACGGTGTGGTCGGCAGTAAGAGGCGCAAGTA
CTGCTCTAAGCATTCCTTGAAGGGAATGGTTGATATTGCGCACAAAACGT
GCGCGAGGGATGGATGCTTAAAGCGTCCAAATTTTGGTGTGGTCGGCAGT
AGGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCATGGGATGGTTAATAT
TGCAAACAAAACGTGTGCGGGCGATGGATGCTTGAAATATCCATGTTATG
GTATGGTCGACAGTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGGAT
GGGATGGTTAATATTGCAAACAAAACGTGTGCGGGGGATGGATGCTTGAA
ATATCCAAGTTACGGTATGGTCGGCAGTAAG back to topCoding sequence (CDS) from alignment at H-elongata_contig101408:858..1938+ >mRNA_H-elongata_contig101408.125.1 ID=mRNA_H-elongata_contig101408.125.1|Name=mRNA_H-elongata_contig101408.125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig101408:858..1938+ (Himanthalia elongata Himel1 dioecious) ATGACCAACGTTATTATTAAGAAGCTTGCCATCGATACATGCGATGAGGA CCCGACGTGCGGAATGTCCGGTAGCAAACAGGCGCAATACTGCGCCGACC ATGCCTTAGAGGGCACGGTCTACTGTGTGAAAAAAGAATGTGGCGGTGAT GAATCCTTTAAGGAACCAAGCTACGGCGTCGCATGCCAGAAAAATCCTGA CTACCTCGCTGAGCATTCTTTGGTAAGGATCGCCAAAGTGAATATAAAAA TTTATGTGGGTGATGACTGCTCTACGGTATCAAGCTACCGGAAGGCCGGC AGTAAAAAGCGGGAATATTTGGCTTATAGTGACGTCGAGGAGTTGGTCAA CATTGTGAATGACAAGTGTGCTGATGATGGGTGCTCGAAGGTACCAATGT ACGGTATGGTCGGCAGTAAGAACCGGGAGTACTGTGCTAAGCATGCTTTA GAGGGAATGGTTCACATTGCAAAGAAAACGTGTGCGGGCGATGGAGGTGT GGTCGGCAGTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCAGGGAA TGTTTGACATTGTAAACAAAACATGTGCGGGCAATGGATGTTTTAAGCAT CTAAATCACGGTGTGGTCGGCAGTAAGAGGCGCAAGTACTGCTCTAAGCA TTCCTTGAAGGGAATGGTTGATATTGCGCACAAAACGTGCGCGAGGGATG GATGCTTAAAGCGTCCAAATTTTGGTGTGGTCGGCAGTAGGAAGCGGGAG TACTGCGCTAAGCATGCCTTGCATGGGATGGTTAATATTGCAAACAAAAC GTGTGCGGGCGATGGATGCTTGAAATATCCATGTTATGGTATGGTCGACA GTAAGAAGCGGGAGTACTGCGCTAAGCATGCCTTGGATGGGATGGTTAAT ATTGCAAACAAAACGTGTGCGGGGGATGGATGCTTGAAATATCCAAGTTA CGGTATGGTCGGCAGTAAGATGACCAACGTTATTATTAAGAAGCTTGCCA TCGATACATGCGATGAGGACCCGACGTGCGGAATGTCCGGTAGCAAACAG GCGCAATACTGCGCCGACCATGCCTTAGAGGGCACGGTCTACTGTGTGAA AAAAGAATGTGGCGGTGATGAATCCTTTAAGGAACCAAGCTACGGCGTCG CATGCCAGAAAAATCCTGACTACCTCGCTGAGCATTCTTTGGTAAGGATC GCCAAAGTGAATATAAAAATTTATGTGGGTGATGACTGCTCTACGGTATC AAGCTACCGGAAGGCCGGCAGTAAAAAGCGGGAATATTTGGCTTATAGTG ACGTCGAGGAGTTGGTCAACATTGTGAATGACAAGTGTGCTGATGATGGG TGCTCGAAGGTACCAATGTACGGTATGGTCGGCAGTAAGAACCGGGAGTA CTGTGCTAAGCATGCTTTAGAGGGAATGGTTCACATTGCAAAGAAAACGT GTGCGGGCGATGGAGGTGTGGTCGGCAGTAAGAAGCGGGAGTACTGCGCT AAGCATGCCTTGCAGGGAATGTTTGACATTGTAAACAAAACATGTGCGGG CAATGGATGTTTTAAGCATCTAAATCACGGTGTGGTCGGCAGTAAGAGGC GCAAGTACTGCTCTAAGCATTCCTTGAAGGGAATGGTTGATATTGCGCAC AAAACGTGCGCGAGGGATGGATGCTTAAAGCGTCCAAATTTTGGTGTGGT CGGCAGTAGGAAGCGGGAGTACTGCGCTAAGCATGCCTTGCATGGGATGG TTAATATTGCAAACAAAACGTGTGCGGGCGATGGATGCTTGAAATATCCA TGTTATGGTATGGTCGACAGTAAGAAGCGGGAGTACTGCGCTAAGCATGC CTTGGATGGGATGGTTAATATTGCAAACAAAACGTGTGCGGGGGATGGAT GCTTGAAATATCCAAGTTACGGTATGGTCGGCAGTAAG back to top
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