mRNA_H-elongata_contig101342.121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101342.121.1
Unique NamemRNA_H-elongata_contig101342.121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: D8LUC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC2_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 2.650e-84
Identity = 135/185 (72.97%), Postives = 153/185 (82.70%), Query Frame = 1
Query:    4 NRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558
            +RADFAKLVTGTVAA+ A+AAPA+AK+GT AKQN+FGV+GAD  +GGG SNYFAES+TYSPYSPY   D ALY+S D AFM KV++D+LKDSQKRLQ VP FIE ++WEEIRSLLTAKA    YS LRDAMNTL+ DKP A  +AKVFYRDIEQLTVYARQKN     +AYN AQ HLTKYL LI
Sbjct:   34 SRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKA----YS-LRDAMNTLAADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 213          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A6H5KN94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN94_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.490e-54
Identity = 88/118 (74.58%), Postives = 105/118 (88.98%), Query Frame = 1
Query:    4 NRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAK 357
            +RADFAKLVTGTVAA+ A+AAPA+AK+GT AKQN+FGV+GADQ +GGG SNYFAES+TYSPYSPY   D+ALY++ D AFM KV++D+LKDSQKRLQ VP FIE ++WEEIRSLLTAK
Sbjct:   34 SRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDEALYKTSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 151          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: K8Z7P0_NANGC (Extrinsic protein in photosystem II n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7P0_NANGC)

HSP 1 Score: 93.2 bits (230), Expect = 4.230e-20
Identity = 61/166 (36.75%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   70 AMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQ---SDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558
            A+AKSG   KQ+ FG LG D       S +  +  TYSPYSPYGT + AL++   +DD    +K+    + +S+KR+  +  ++EK+QWEE+R+ LT +   L  S  + A N   K  P A+   K  ++DIE LTV +R+K  + +  AY+ AQ     +L+ +
Sbjct:   69 ALAKSGEGPKQSVFG-LGGDAAS----SPFVQDVPTYSPYSPYGTGENALFKPLNADD----VKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAEN---KQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A7S1BDA1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDA1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.480e-9
Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = 1
Query:   28 VTGTVAASVALAAP--AMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESET-YSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558
            V G + A++ +AAP  A A +G + K + FG++G   ++  G +    +  T YSPYS YGT +  LY + +  F  + Q  V+ +S+ RL  +PA+IEK+QW  +R  LT       Y   R+++   +K        A+ F+  IE+L+  A  K  ++A  A   +   L  +  LI
Sbjct:   38 VFGAIGAAI-IAAPTAASAVAGDSPKFSVFGIVGEKTSMSEGAAYGSDQKSTLYSPYSVYGTGEGKLYDASNPEFDAR-QKAVIAESKVRLTKIPAYIEKKQWFNVRDELTR----YMYGT-RESVRYFAKTS-ETKKAAQTFFVAIEKLSGSATLKKQDEARAAIEESIAALDAFSALI 209          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: B7FZ94_PHATC (Oxygen-evolving enhancer protein 3 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ94_PHATC)

HSP 1 Score: 63.9 bits (154), Expect = 3.020e-9
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   70 AMAKSGTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYG---TPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEA 513
            A A  G + + + FG++G     + G  Y    A S+ YSPYS YG    PD +LY+  +  ++ + +  +L +++KRLQ +PA+IEK++W E+    T + S   Y   R A++ L K  P     A  F++ IE+  + ARQK+   A  A
Sbjct:   42 ANAAVGESPRFSVFGLIGDGTSYSEGAAYGTDQA-SKLYSPYSVYGEVGNPD-SLYKDTNPEYLARKKA-ILAETRKRLQKLPAYIEKKKWFEV----TTELSRFMYET-RGAIDFLGKS-PEQKKKAVAFFKAIEKTNLSARQKDQAAAASA 185          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: K0SUU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUU3_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 5.040e-9
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   40 VAASVALAAPAMAKS--GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGT--PDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEA 513
            +AA+ A+ APA A +  G + + + FGV+G     + G  Y +    S  YSPYS YG      ALY +++ A  ++ +   + +SQKRL  +PA++E+++W  ++  LT       Y   R A+  L+ + P    +AK F++ IE+ ++ A  KN +K   A
Sbjct:   43 IAAAAAVIAPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSD-QSSAVYSPYSVYGNVGSSDALYSANN-AGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTR----YMYET-RGAVRGLA-ETPEQKKIAKSFFQAIEEASLQATLKNQDKCAAA 198          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A7S2UD36_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD36_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.510e-7
Identity = 51/180 (28.33%), Postives = 90/180 (50.00%), Query Frame = 1
Query:   34 GTVAASVALAAPAMAKS--GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGTP-DKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558
            G  AA+ A   P  A +  G + + + FG++G     + G  Y +    S+ YSPYS YG   D+ALY++ +  F  + +  V+ +SQ RL+ +PA+IE+++W  ++  LT           R A+  L++ K  +   A  F++ IE     A  +  E+ + A   +QV L  ++  +
Sbjct:   39 GAAAAAAAAFLPVAANAAIGESPRFSVFGLIGDGTSYSEGAAYGSD-QTSKLYSPYSVYGDDTDQALYKAGNPEFK-ENKKKVIAESQLRLKKLPAYIERKEWFNVKDELTRY-----MGETRPAVRGLAETKAQS-KAANAFFKSIEATYGSATLRKGEECMAAALDSQVKLDAFVSTL 210          
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: B6ZHE9_9STRA (Extrinsic protein in photosystem II n=2 Tax=Chaetoceros gracilis TaxID=184592 RepID=B6ZHE9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.980e-5
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   85 GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGTP-DKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQV 531
            G + + + FG++G     + G  Y    A+ + YSPYS Y    +K+LY+ D+  ++ + +  VL +++ RLQ +PA+++K++W  ++  LT       Y   R A+ +LS         A+VF+R +E     A  K  + A++A N   +
Sbjct:   59 GESPRFSVFGLVGDGTSYSEGAAYGTDQAD-KLYSPYSVYSPEGEKSLYKPDNAEYLARKKA-VLAETKNRLQKIPAYVDKKEWFNVKDELTR----YMYET-RGAVRSLSSSVTQKEK-AEVFFRALEDTYGAATLKKGD-AVKASNDKAI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LUC2_ECTSI2.650e-8472.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN94_9PHAE5.490e-5474.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8Z7P0_NANGC4.230e-2036.75Extrinsic protein in photosystem II n=3 Tax=Monodo... [more]
A0A7S1BDA1_9STRA2.480e-931.11Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B7FZ94_PHATC3.020e-933.33Oxygen-evolving enhancer protein 3 n=3 Tax=Phaeoda... [more]
K0SUU3_THAOC5.040e-931.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2UD36_9STRA4.510e-728.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B6ZHE9_9STRA3.980e-528.29Extrinsic protein in photosystem II n=2 Tax=Chaeto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101342contigH-elongata_contig101342:725..2304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.8
Seed ortholog evalue6.1e-65
Seed eggNOG ortholog2880.D8LUC2
KEGG koko:K08901
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG OGs2E8QV@1,2SF67@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPsbQ-like domain
Ec32 orthologEc-14_004430.1
Exons2
Model size561
Cds size561
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.548269-CDS-H-elongata_contig101342:724..9051622929553.548269-CDS-H-elongata_contig101342:724..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101342 725..905 -
1691679067.300965-CDS-H-elongata_contig101342:724..9051691679067.300965-CDS-H-elongata_contig101342:724..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101342 725..905 -
1622929553.5594397-CDS-H-elongata_contig101342:1924..23041622929553.5594397-CDS-H-elongata_contig101342:1924..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101342 1925..2304 -
1691679067.3125656-CDS-H-elongata_contig101342:1924..23041691679067.3125656-CDS-H-elongata_contig101342:1924..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101342 1925..2304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101342.121.1prot_H-elongata_contig101342.121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101342 725..2304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101342.121.1

>prot_H-elongata_contig101342.121.1 ID=prot_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
TNRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGY
SNYFAESETYSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGV
PAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFY
RDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI*
back to top

mRNA from alignment at H-elongata_contig101342:725..2304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101342.121.1 ID=mRNA_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-elongata_contig101342:725..2304- (Himanthalia elongata Himel1 dioecious)
ACCAACCGCGCCGACTTCGCAAAGCTCGTCACCGGGACTGTCGCGGCGTC GGTTGCCTTGGCGGCACCGGCCATGGCCAAATCCGGCACGGCAGCGAAGC AAAACTACTTTGGCGTGCTGGGCGCGGACCAAAACGTGGGTGGCGGGTAC TCGAACTACTTCGCAGAGTCGGAGACGTACTCACCGTACTCTCCGTACGG CACCCCCGACAAGGCGCTGTACCAGTCGGACGACGGGGCGTTCATGCTCA AGGTCCAGGTCGACGTCCTGAAGGACTCTCAGAAACGACTCCAGGGCGTG CCCGCCTTCATCGAGAAGAGGCAATGGGAGGAGATCCGCTCTCTCCTAAC TGCCAAGGCAAGCCTTCTTTGTTATTCCGCGTCGGGCTTCGTTTGGTCCC CGCCCTTGTCCTGACCCGTGTGTGCGGGAATTTTTGTTCGGATTCGGTCG GGTGCCGTTGGTGGTCCCTCTCGTCGTGAGCAACCTTTGGGCGAAATGCT CTAGGTATTTAAACATCGGTAGCGAAAAAACCTAGCCGAAATAGTTTCGT ACGCAGTAGGAACGTGGGGACAGTACTCTCAAAAAAAAAGTGCCTAAAAT TTAACTTACTATATATATATATACGTAGATATATGAAGGGACTGGCTATG AAAGCTGGTGTACCTGAAAGGCTAACCCGCGCGGAGTGGGGAGAGGCTGT CTCTACCACGGTCACGGCTAACTCGCGTCGCCTTTTGACCGACCAGGAAT AAAAACTACTGATTTGAGAAGCGTACCTCACAAACCGCGAAGACTAGTTT CTGTCGTGGAGGAGGGTGGGGTGTAGGGTTATTGGTCGTCATCTTACCCT ATTACTCCTCGGCCACAGATGCAAAGTGTTGTTTTTATTGTAGAATGTGC ACCACGTCCTGATGGCGGTGGCAGCTGCGTCGATGTTGAATTTTGGATAA AAGCGCTTCCCAAGCTGCTCTGCAAGCGTTAACCACCTAGGTCGCACTTG GGCAGAGCAATGCATCGAGCGCGCTTCCCGCCCTGGATTTCCCTGAAGTA TAGCTAACGCACCGCGACGATAGCAGCAAATAGACACAGTTGCTGATGAC TCGCACAGCATTTATGTATTGTCTCTGGTGATTTGAAGCTTCTTACCACA GCGGTGTGAGCGAGGATAGTATTGCCGTTCTCTTGGGTGCCAGGATGACT TGGCCGCTGTTTTGCAGCAGAGTAGAAGCTCCCATCCCACGATGAGTTTG ACATAGCTGTATTCAATGGCTACATACACGCTAGATTATCTCGGCCGTCT CTAGTTGCACGTGATTGATCGACGGCCGTGTACATAATACGTTAAACCGC TTCCTCGATTTCTCTTGCGGACGCGCGTCGACCCCTCACAGGCGTACAGC CTAAGGGATGCCATGAACACGCTGTCGAAGGACAAGCCGAACGCGACCAA CATGGCCAAGGTCTTCTACAGGGACATTGAGCAGCTCACTGTGTACGCTC GCCAAAAGAACCCCGAGAAGGCTCTCGAGGCATACAACAGTGCGCAGGTT CACCTCACCAAGTACCTCGAACTCATCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig101342:725..2304-

>mRNA_H-elongata_contig101342.121.1 ID=mRNA_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig101342:725..2304- (Himanthalia elongata Himel1 dioecious)
ACCAACCGCGCCGACTTCGCAAAGCTCGTCACCGGGACTGTCGCGGCGTC
GGTTGCCTTGGCGGCACCGGCCATGGCCAAATCCGGCACGGCAGCGAAGC
AAAACTACTTTGGCGTGCTGGGCGCGGACCAAAACGTGGGTGGCGGGTAC
TCGAACTACTTCGCAGAGTCGGAGACGTACTCACCGTACTCTCCGTACGG
CACCCCCGACAAGGCGCTGTACCAGTCGGACGACGGGGCGTTCATGCTCA
AGGTCCAGGTCGACGTCCTGAAGGACTCTCAGAAACGACTCCAGGGCGTG
CCCGCCTTCATCGAGAAGAGGCAATGGGAGGAGATCCGCTCTCTCCTAAC
TGCCAAGGCAAGCCTTCTTTGTTATTCCGCACCAACCGCGCCGACTTCGC
AAAGCTCGTCACCGGGACTGTCGCGGCGTCGGTTGCCTTGGCGGCACCGG
CCATGGCCAAATCCGGCACGGCAGCGAAGCAAAACTACTTTGGCGTGCTG
GGCGCGGACCAAAACGTGGGTGGCGGGTACTCGAACTACTTCGCAGAGTC
GGAGACGTACTCACCGTACTCTCCGTACGGCACCCCCGACAAGGCGCTGT
ACCAGTCGGACGACGGGGCGTTCATGCTCAAGGTCCAGGTCGACGTCCTG
AAGGACTCTCAGAAACGACTCCAGGGCGTGCCCGCCTTCATCGAGAAGAG
GCAATGGGAGGAGATCCGCTCTCTCCTAACTGCCAAGGCAAGCCTTCTTT
GTTATTCCGCCCTAAGGGATGCCATGAACACGCTGTCGAAGGACAAGCCG
AACGCGACCAACATGGCCAAGGTCTTCTACAGGGACATTGAGCAGCTCAC
TGTGTACGCTCGCCAAAAGAACCCCGAGAAGGCTCTCGAGGCATACAACA
GTGCGCAGGTTCACCTCACCAAGTACCTCGAACTCATCTAGCCTAAGGGA
TGCCATGAACACGCTGTCGAAGGACAAGCCGAACGCGACCAACATGGCCA
AGGTCTTCTACAGGGACATTGAGCAGCTCACTGTGTACGCTCGCCAAAAG
AACCCCGAGAAGGCTCTCGAGGCATACAACAGTGCGCAGGTTCACCTCAC
CAAGTACCTCGAACTCATCTAG
back to top