mRNA_H-elongata_contig101342.121.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: D8LUC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC2_ECTSI) HSP 1 Score: 256 bits (655), Expect = 2.650e-84 Identity = 135/185 (72.97%), Postives = 153/185 (82.70%), Query Frame = 1 Query: 4 NRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558 +RADFAKLVTGTVAA+ A+AAPA+AK+GT AKQN+FGV+GAD +GGG SNYFAES+TYSPYSPY D ALY+S D AFM KV++D+LKDSQKRLQ VP FIE ++WEEIRSLLTAKA YS LRDAMNTL+ DKP A +AKVFYRDIEQLTVYARQKN +AYN AQ HLTKYL LI Sbjct: 34 SRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKA----YS-LRDAMNTLAADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 213
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A6H5KN94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN94_9PHAE) HSP 1 Score: 177 bits (450), Expect = 5.490e-54 Identity = 88/118 (74.58%), Postives = 105/118 (88.98%), Query Frame = 1 Query: 4 NRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAK 357 +RADFAKLVTGTVAA+ A+AAPA+AK+GT AKQN+FGV+GADQ +GGG SNYFAES+TYSPYSPY D+ALY++ D AFM KV++D+LKDSQKRLQ VP FIE ++WEEIRSLLTAK Sbjct: 34 SRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDEALYKTSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 151
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: K8Z7P0_NANGC (Extrinsic protein in photosystem II n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7P0_NANGC) HSP 1 Score: 93.2 bits (230), Expect = 4.230e-20 Identity = 61/166 (36.75%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 70 AMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESETYSPYSPYGTPDKALYQ---SDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558 A+AKSG KQ+ FG LG D S + + TYSPYSPYGT + AL++ +DD +K+ + +S+KR+ + ++EK+QWEE+R+ LT + L S + A N K P A+ K ++DIE LTV +R+K + + AY+ AQ +L+ + Sbjct: 69 ALAKSGEGPKQSVFG-LGGDAAS----SPFVQDVPTYSPYSPYGTGENALFKPLNADD----VKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAEN---KQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A7S1BDA1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDA1_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.480e-9 Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = 1 Query: 28 VTGTVAASVALAAP--AMAKSGTAAKQNYFGVLGADQNVGGGYSNYFAESET-YSPYSPYGTPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558 V G + A++ +AAP A A +G + K + FG++G ++ G + + T YSPYS YGT + LY + + F + Q V+ +S+ RL +PA+IEK+QW +R LT Y R+++ +K A+ F+ IE+L+ A K ++A A + L + LI Sbjct: 38 VFGAIGAAI-IAAPTAASAVAGDSPKFSVFGIVGEKTSMSEGAAYGSDQKSTLYSPYSVYGTGEGKLYDASNPEFDAR-QKAVIAESKVRLTKIPAYIEKKQWFNVRDELTR----YMYGT-RESVRYFAKTS-ETKKAAQTFFVAIEKLSGSATLKKQDEARAAIEESIAALDAFSALI 209
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: B7FZ94_PHATC (Oxygen-evolving enhancer protein 3 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ94_PHATC) HSP 1 Score: 63.9 bits (154), Expect = 3.020e-9 Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1 Query: 70 AMAKSGTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYG---TPDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEA 513 A A G + + + FG++G + G Y A S+ YSPYS YG PD +LY+ + ++ + + +L +++KRLQ +PA+IEK++W E+ T + S Y R A++ L K P A F++ IE+ + ARQK+ A A Sbjct: 42 ANAAVGESPRFSVFGLIGDGTSYSEGAAYGTDQA-SKLYSPYSVYGEVGNPD-SLYKDTNPEYLARKKA-ILAETRKRLQKLPAYIEKKKWFEV----TTELSRFMYET-RGAIDFLGKS-PEQKKKAVAFFKAIEKTNLSARQKDQAAAASA 185
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: K0SUU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUU3_THAOC) HSP 1 Score: 63.5 bits (153), Expect = 5.040e-9 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 40 VAASVALAAPAMAKS--GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGT--PDKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEA 513 +AA+ A+ APA A + G + + + FGV+G + G Y + S YSPYS YG ALY +++ A ++ + + +SQKRL +PA++E+++W ++ LT Y R A+ L+ + P +AK F++ IE+ ++ A KN +K A Sbjct: 43 IAAAAAVIAPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSD-QSSAVYSPYSVYGNVGSSDALYSANN-AGEVERKKGFIAESQKRLSKLPAYVERKEWFNVKDELTR----YMYET-RGAVRGLA-ETPEQKKIAKSFFQAIEEASLQATLKNQDKCAAA 198
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: A0A7S2UD36_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD36_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.510e-7 Identity = 51/180 (28.33%), Postives = 90/180 (50.00%), Query Frame = 1 Query: 34 GTVAASVALAAPAMAKS--GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGTP-DKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQVHLTKYLELI 558 G AA+ A P A + G + + + FG++G + G Y + S+ YSPYS YG D+ALY++ + F + + V+ +SQ RL+ +PA+IE+++W ++ LT R A+ L++ K + A F++ IE A + E+ + A +QV L ++ + Sbjct: 39 GAAAAAAAAFLPVAANAAIGESPRFSVFGLIGDGTSYSEGAAYGSD-QTSKLYSPYSVYGDDTDQALYKAGNPEFK-ENKKKVIAESQLRLKKLPAYIERKEWFNVKDELTRY-----MGETRPAVRGLAETKAQS-KAANAFFKSIEATYGSATLRKGEECMAAALDSQVKLDAFVSTL 210
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Match: B6ZHE9_9STRA (Extrinsic protein in photosystem II n=2 Tax=Chaetoceros gracilis TaxID=184592 RepID=B6ZHE9_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 3.980e-5 Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 85 GTAAKQNYFGVLG--ADQNVGGGYSNYFAESETYSPYSPYGTP-DKALYQSDDGAFMLKVQVDVLKDSQKRLQGVPAFIEKRQWEEIRSLLTAKASLLCYSALRDAMNTLSKDKPNATNMAKVFYRDIEQLTVYARQKNPEKALEAYNSAQV 531 G + + + FG++G + G Y A+ + YSPYS Y +K+LY+ D+ ++ + + VL +++ RLQ +PA+++K++W ++ LT Y R A+ +LS A+VF+R +E A K + A++A N + Sbjct: 59 GESPRFSVFGLVGDGTSYSEGAAYGTDQAD-KLYSPYSVYSPEGEKSLYKPDNAEYLARKKA-VLAETKNRLQKIPAYVDKKEWFNVKDELTR----YMYET-RGAVRSLSSSVTQKEK-AEVFFRALEDTYGAATLKKGD-AVKASNDKAI 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101342.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101342.121.1 >prot_H-elongata_contig101342.121.1 ID=prot_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp TNRADFAKLVTGTVAASVALAAPAMAKSGTAAKQNYFGVLGADQNVGGGYback to top mRNA from alignment at H-elongata_contig101342:725..2304- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101342.121.1 ID=mRNA_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-elongata_contig101342:725..2304- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101342:725..2304- >mRNA_H-elongata_contig101342.121.1 ID=mRNA_H-elongata_contig101342.121.1|Name=mRNA_H-elongata_contig101342.121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig101342:725..2304- (Himanthalia elongata Himel1 dioecious)back to top |