mRNA_H-elongata_contig101341.120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101341.120.1
Unique NamemRNA_H-elongata_contig101341.120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: A0A6H5JS20_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.000e-27
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 MAQSVSVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYE---EVPGSAGTTNLFN 177
            MAQ VS+LDGEVNRNW+LVDS G+KHLLTLFHDC+TGARAAMLDYE   EVPGSAGTTNLFN
Sbjct:    1 MAQQVSILDGEVNRNWHLVDSGGEKHLLTLFHDCMTGARAAMLDYEAKEEVPGSAGTTNLFN 62
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: A0A7S2DHE0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHE0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.620e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 QSVSVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYEEVPGSAGTTNLFN 177
            Q VSVL GEVNR+W   D  G+ H ++L+H  VTGARAAMLDYEE+PGS GT+++F+
Sbjct:   10 QMVSVLSGEVNRSWLFPDQDGRVHEVSLYHHTVTGARAAMLDYEELPGSLGTSSMFH 66
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.840e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   16 SVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYEEVPGSAGTTNLFN 177
            SV  GE+NR+W  +DS G +H+L+L HDCV+GARA +LDY E+  SAGT+N  N
Sbjct:   90 SVFSGEINRHWEFLDSAGGRHVLSLIHDCVSGARACLLDYAELKDSAGTSNCLN 143
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: A0A7S2UVB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-12
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   13 VSVLDGEVNRNWYLVDSQG--QKHLLTLFHDCVTGARAAMLDYEEVPGSAGTTNLF 174
            VS+  GE+NR W  VD +G  ++H++TL+HD +TG R AM+DYEE+ GS GT+++ 
Sbjct:    2 VSLWSGELNRTWRFVDPEGGDKEHVVTLYHDTITGVRCAMMDYEEIQGSMGTSSVL 57
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: F0YDA6_AURAN (PX domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA6_AURAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.090e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 VSVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYEEVPGSAGTTNLFN 177
            VS+  GEVNR W   D  GQ H ++L+H  +TGARAA++D+EE+ GS GT+++F+
Sbjct:    2 VSIFSGEVNRTWRFCDGGGQHHEVSLYHHPLTGARAALVDHEELEGSLGTSSVFH 56
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BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Match: A0A7S3NJE9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJE9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.700e-10
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   13 VSVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYEEVPGSAGTTNLFN 177
            VS+  GEV R+W   D +G KH ++L+H  +TGARAAM+D+EE+ GS GT+++F+
Sbjct:    3 VSIFAGEVCRSWKFEDREGIKHEVSLWHHPLTGARAAMVDHEELEGSLGTSSVFH 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101341.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JS20_9PHAE8.000e-2785.48PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2DHE0_9STRA1.620e-1561.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YSM5_9STRA7.840e-1457.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UVB3_9STRA1.620e-1250.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0YDA6_AURAN4.090e-1150.91PX domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7S3NJE9_9STRA6.700e-1050.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101341contigH-elongata_contig101341:876..1736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.7e-09
Seed eggNOG ortholog44056.XP_009038266.1
KEGG koko:K06236,ko:K19069
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC1.1.99.18
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko04516
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.4888182-CDS-H-elongata_contig101341:875..9141622929553.4888182-CDS-H-elongata_contig101341:875..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101341 876..914 -
1691679067.281156-CDS-H-elongata_contig101341:875..9141691679067.281156-CDS-H-elongata_contig101341:875..914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101341 876..914 -
1622929553.5031316-CDS-H-elongata_contig101341:1598..17361622929553.5031316-CDS-H-elongata_contig101341:1598..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101341 1599..1736 -
1691679067.2913957-CDS-H-elongata_contig101341:1598..17361691679067.2913957-CDS-H-elongata_contig101341:1598..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101341 1599..1736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101341.120.1prot_H-elongata_contig101341.120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101341 876..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101341.120.1

>prot_H-elongata_contig101341.120.1 ID=prot_H-elongata_contig101341.120.1|Name=mRNA_H-elongata_contig101341.120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MAQSVSVLDGEVNRNWYLVDSQGQKHLLTLFHDCVTGARAAMLDYEEVPG
SAGTTNLFN
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mRNA from alignment at H-elongata_contig101341:876..1736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101341.120.1 ID=mRNA_H-elongata_contig101341.120.1|Name=mRNA_H-elongata_contig101341.120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig101341:876..1736- (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGTCCGTGAGCGTCCTCGATGGAGAAGTGAATCGGAACTGGTA
CCTCGTCGACAGCCAAGGCCAGAAGCACCTCCTGACCCTCTTCCACGACT
GTGTCACAGGCGCACGGGCGGCGATGCTTGACTACGAGGTGAGTTCCTCG
GGTGCTGAAATTCAACGTGGTATCGGTGATTACCTTCCACCGGTGTTGGT
TTCGAAATAGATGGGTCTGTGGTGTAGCTGTGTTGGATTGACATCTCTTG
ATGCCTTTGTTTGCTCCACAGTTGGGGGTGCTCGCACGCACACCTTATAT
TGCGCACCGCGTTTGCTTTACCGGGGACACATGTGTTTTCGACATCCGCC
TCAGCAGTGCGGAAAAAAAAACTAATCGAAGCGAAAGGAAGTGATTCGTT
TGCTTCCACCCACCTCAGATGACAACGGTCGCTCAAATGCAAGCAAAAAT
ATCACGCCAAGGTTCTTAAATCTAAACGAGCATGCGTGCTTCGCCGGGGG
AAATGAGGAGGTCCTCAAATTTTCTAGGGTTTGCCTCTCCAGTAAATATT
TCTTCTCATATTTCCGTGGTTTCCCATCGGCTCGAGCTCGCAAGCTATTA
TTATTAAAAAAAAAAACATATGGACTCATTAGAATCCTCCAAACATCCAA
GCACCATGAGAGGTGTAGTCCAGGGGACCAACTATCGTCAGGTTCTAATG
TGGACATAATAATGTAACTCACATAGCGCGTGCATCTCGAGTTGGCAATC
GTGGGCAAAAGAATTGTCGTCAGTGTCGTCCGCCCAAACCCTCCTTCATC
AAAATGTTCCACTGTGCTGCAGGAAGTCCCTGGTTCGGCGGGCACGACGA
ACTTATTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig101341:876..1736-

>mRNA_H-elongata_contig101341.120.1 ID=mRNA_H-elongata_contig101341.120.1|Name=mRNA_H-elongata_contig101341.120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig101341:876..1736- (Himanthalia elongata Himel1 dioecious)
ATGGCTCAGTCCGTGAGCGTCCTCGATGGAGAAGTGAATCGGAACTGGTA
CCTCGTCGACAGCCAAGGCCAGAAGCACCTCCTGACCCTCTTCCACGACT
GTGTCACAGGCGCACGGGCGGCGATGCTTGACTACGAGATGGCTCAGTCC
GTGAGCGTCCTCGATGGAGAAGTGAATCGGAACTGGTACCTCGTCGACAG
CCAAGGCCAGAAGCACCTCCTGACCCTCTTCCACGACTGTGTCACAGGCG
CACGGGCGGCGATGCTTGACTACGAGGAAGTCCCTGGTTCGGCGGGCACG
ACGAACTTATTCAACGAAGTCCCTGGTTCGGCGGGCACGACGAACTTATT
CAAC
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