mRNA_H-elongata_contig10133.118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10133.118.1
Unique NamemRNA_H-elongata_contig10133.118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10133.118.1 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.550e-17
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 MEFERALFRVYDRSMEGFQTPTARNTCNLAQQLLLVVSAGLVACLVLLHRDFVNNPG 171
            ME+ERALFRVYD+SMEGF +   R+ CNL Q+L LV SAGL A LVLLH  FVN PG
Sbjct:    1 MEYERALFRVYDKSMEGFHSREVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPG 57
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BLAST of mRNA_H-elongata_contig10133.118.1 vs. uniprot
Match: D8LRC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.700e-17
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 MEFERALFRVYDRSMEGFQTPTARNTCNLAQQLLLVVSAGLVACLVLLHRDFVNNPG 171
            ME+ERALFRVYD+SMEGF +   R+ CNL Q+L+LV SAGL A L LLH  FVN PG
Sbjct:    1 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLVLVASAGLFAALFLLHHQFVNKPG 57
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BLAST of mRNA_H-elongata_contig10133.118.1 vs. uniprot
Match: A0A482SLQ4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLQ4_9ARCH)

HSP 1 Score: 50.4 bits (119), Expect = 1.430e-6
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    1 MEFERALFRVYDRSMEGFQT---------PTARNTCNLAQQLLLVVSAGLVACLVLLHRDFVNNPG 171
            MEFERAL+RVY+RS+E             P  + +C L Q  +L+++  L++C + LH  +V + G
Sbjct:    1 MEFERALYRVYERSIESIMQEEDPSLQSEPIYKKSCKLFQYFILLITLFLLSCFIFLHTTYVGSAG 66
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BLAST of mRNA_H-elongata_contig10133.118.1 vs. uniprot
Match: A0A7S4DCY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY7_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 2.110e-6
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 MEFERALFRVYDRSMEGFQTPT-----ARNTCNL--AQQLLLVVSAGLVACLVLLHRDFVNNPG 171
            MEFERALFRVYDRS+E  Q  +     AR +  L  +Q++L++V+ G++     LH  FV  PG
Sbjct:    1 MEFERALFRVYDRSLESIQLDSPWFGNARPSVILKWSQKILMIVALGMIVLTATLHTTFVEQPG 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10133.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JH19_9PHAE7.550e-1768.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRC9_ECTSI8.700e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482SLQ4_9ARCH1.430e-636.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4DCY7_HETAK2.110e-645.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10133contigH-elongata_contig10133:79..249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_003000.1
Hectar predicted targeting categorysignal anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.2968402-CDS-H-elongata_contig10133:78..2491622929553.2968402-CDS-H-elongata_contig10133:78..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10133 79..249 -
1691679067.15018-CDS-H-elongata_contig10133:78..2491691679067.15018-CDS-H-elongata_contig10133:78..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10133 79..249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10133.118.1prot_H-elongata_contig10133.118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10133 79..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10133.118.1

>prot_H-elongata_contig10133.118.1 ID=prot_H-elongata_contig10133.118.1|Name=mRNA_H-elongata_contig10133.118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MEFERALFRVYDRSMEGFQTPTARNTCNLAQQLLLVVSAGLVACLVLLHR
DFVNNPG
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mRNA from alignment at H-elongata_contig10133:79..249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10133.118.1 ID=mRNA_H-elongata_contig10133.118.1|Name=mRNA_H-elongata_contig10133.118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig10133:79..249- (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCGAAAGGGCGCTGTTCCGTGTGTATGATAGGTCCATGGAAGG
ATTTCAAACACCCACCGCGAGGAACACGTGCAACCTCGCTCAGCAGTTGC
TCCTCGTCGTCAGTGCTGGTCTGGTGGCTTGCCTGGTGCTGCTTCATCGG
GACTTCGTGAACAATCCTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig10133:79..249-

>mRNA_H-elongata_contig10133.118.1 ID=mRNA_H-elongata_contig10133.118.1|Name=mRNA_H-elongata_contig10133.118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig10133:79..249- (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCGAAAGGGCGCTGTTCCGTGTGTATGATAGGTCCATGGAAGG
ATTTCAAACACCCACCGCGAGGAACACGTGCAACCTCGCTCAGCAGTTGC
TCCTCGTCGTCAGTGCTGGTCTGGTGGCTTGCCTGGTGCTGCTTCATCGG
GACTTCGTGAACAATCCTGGTATGGAGTTCGAAAGGGCGCTGTTCCGTGT
GTATGATAGGTCCATGGAAGGATTTCAAACACCCACCGCGAGGAACACGT
GCAACCTCGCTCAGCAGTTGCTCCTCGTCGTCAGTGCTGGTCTGGTGGCT
TGCCTGGTGCTGCTTCATCGGGACTTCGTGAACAATCCTGGT
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