mRNA_H-elongata_contig101282.112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101282.112.1
Unique NamemRNA_H-elongata_contig101282.112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: D7G613_ECTSI (PUB domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.180e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    7 QEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEEGRLYMSLEVR 150
            +E+KFRSINLDNNA+KNRVA CIGG ALL+AVGFAKEE RL+MS+E R
Sbjct:  522 EEEKFRSINLDNNAFKNRVATCIGGVALLKAVGFAKEESRLFMSMEAR 569
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A4D9D704_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 27/47 (57.45%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 EDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKE--EGRLYMSLE 144
            E+KFRSINL+N A+K+RVAP +GG++LL+A+GF K+  EGR +++ E
Sbjct:  510 EEKFRSINLENKAFKSRVAPVLGGSSLLKAIGFTKDDVEGRWFLAPE 556
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A835Z023_9STRA (PUB domain, zinc finger protein thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z023_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 EDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKE----EGRLYMSLEVR 150
            E+K+R+I+LDN A+K R+A C+GG  LLRA+GFAK     E RL MS + R
Sbjct:  513 EEKYRAISLDNKAFKARIAGCLGGVGLLRAIGFAKADDGGEARLVMSADAR 563
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A7S4D7L7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7L7_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-8
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 MRQEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKE--EGRLYM 135
            +  + KFRSIN+DNNA+  RVAP IGG ALLRA+GF K+  E RL +
Sbjct:  136 LNDDPKFRSINMDNNAFMTRVAPFIGGVALLRALGFEKDPAENRLVL 182
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A329T0H4_9STRA (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=A0A329T0H4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 QEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEE--GRLYMSLEVR 150
            +EDKFR+INLDN A++ RVA  +GG A L+++G+AK+E  G L +S+E R
Sbjct:  432 EEDKFRTINLDNAAFRKRVASLVGGVAFLKSLGYAKDEADGNLKLSVENR 481
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A7S3XV98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV98_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 3.510e-8
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 MRQEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKE--EGRLYM 135
            +  + KFRSIN+DNNA+  RVAP IGG ALLRA+GF K+  E RL +
Sbjct:  273 LNDDPKFRSINMDNNAFMTRVAPFIGGVALLRALGFEKDPAENRLVL 319
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A8J2S6A4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6A4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.740e-8
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 QEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEEGRLYMSLEVR 150
            Q++K+R I LDN A+K RV+  +GG ALL+AVGF K+E  L ++L VR
Sbjct:  314 QDEKYRKIPLDNAAFKKRVSGLVGGIALLKAVGFVKDETHLELTLAVR 361
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: G4ZJ49_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJ49_PHYSP)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 EDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEE--GRLYMSLEVR 150
            EDKFR+INL+N A++ RVA  +GG A L+A+G+ K+E  G L +S+E R
Sbjct:  437 EDKFRTINLENPAFRKRVASLVGGVAFLKALGYEKDEADGNLKLSVEKR 485
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A2D4BDJ2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDJ2_PYTIN)

HSP 1 Score: 54.3 bits (129), Expect = 3.250e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 EDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEE--GRLYMSLEVR 150
            EDKFRSINL+N A++ RVA  +GG A L+A+G+ K+E  G L +++E R
Sbjct:  428 EDKFRSINLENAAFRKRVASLVGGVAFLKALGYEKDEQSGMLNLAVEKR 476
[Close]
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Match: A0A3R7HMX5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HMX5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.450e-7
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 QEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEE--GRLYMSLEVR 150
            +E+KFR+INL+N A++ RVA  +GG A L+++G+ K+E  G L +SLE R
Sbjct:  432 EEEKFRTINLENPAFRKRVASLVGGVAFLKSLGYEKDESDGNLKLSLEKR 481
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101282.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G613_ECTSI2.180e-1779.17PUB domain, zinc finger protein Thioredoxin n=1 Ta... [more]
A0A4D9D704_9STRA2.980e-957.45Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835Z023_9STRA1.040e-854.90PUB domain, zinc finger protein thioredoxin n=1 Ta... [more]
A0A7S4D7L7_HETAK1.800e-859.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A329T0H4_9STRA2.660e-854.00Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]
A0A7S3XV98_HETAK3.510e-859.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2S6A4_9STRA6.740e-854.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
G4ZJ49_PHYSP2.380e-753.06Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2D4BDJ2_PYTIN3.250e-753.06Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7HMX5_9STRA4.450e-750.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101282contigH-elongata_contig101282:1979..2128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5e-14
Seed eggNOG ortholog2880.D7G613
Preferred nameUBXN1
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010466,GO:0010498,GO:0010605,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0030425,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0034098,GO:0036435,GO:0036477,GO:0042175,GO:0042176,GO:0042177,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045861,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051603,GO:0052547,GO:0060255,GO:0061136,GO:0065007,GO:0065009,GO:0071704,GO:0071796,GO:0080090,GO:0080134,GO:0080135,GO:0090085,GO:0090086,GO:0097447,GO:0097458,GO:0098796,GO:0098827,GO:0120025,GO:0120038,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1903050,GO:1903051,GO:1903093,GO:1903094,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903573,GO:1904292,GO:1904293,GO:1905897,GO:2000058,GO:2000059,GO:2000152,GO:2000157
EggNOG free text desc.K6-linked polyubiquitin modification-dependent protein binding
EggNOG OGsKOG0908@1,KOG0908@2759,KOG2689@1,KOG2689@2759
EC3.5.1.52
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.6701882-CDS-H-elongata_contig101282:1978..21281622929552.6701882-CDS-H-elongata_contig101282:1978..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101282 1979..2128 -
1691679066.7637138-CDS-H-elongata_contig101282:1978..21281691679066.7637138-CDS-H-elongata_contig101282:1978..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101282 1979..2128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101282.112.1prot_H-elongata_contig101282.112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101282 1979..2128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101282.112.1

>prot_H-elongata_contig101282.112.1 ID=prot_H-elongata_contig101282.112.1|Name=mRNA_H-elongata_contig101282.112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MRQEDKFRSINLDNNAYKNRVAPCIGGTALLRAVGFAKEEGRLYMSLEVR
back to top

mRNA from alignment at H-elongata_contig101282:1979..2128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101282.112.1 ID=mRNA_H-elongata_contig101282.112.1|Name=mRNA_H-elongata_contig101282.112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig101282:1979..2128- (Himanthalia elongata Himel1 dioecious)
ATGAGACAGGAAGATAAATTTCGCTCCATCAACCTAGACAACAACGCTTA
TAAGAATCGCGTCGCGCCGTGCATCGGGGGAACGGCTCTGCTGAGGGCTG
TCGGCTTCGCCAAGGAGGAAGGACGCTTGTACATGAGCTTGGAGGTAAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig101282:1979..2128-

>mRNA_H-elongata_contig101282.112.1 ID=mRNA_H-elongata_contig101282.112.1|Name=mRNA_H-elongata_contig101282.112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig101282:1979..2128- (Himanthalia elongata Himel1 dioecious)
ATGAGACAGGAAGATAAATTTCGCTCCATCAACCTAGACAACAACGCTTA
TAAGAATCGCGTCGCGCCGTGCATCGGGGGAACGGCTCTGCTGAGGGCTG
TCGGCTTCGCCAAGGAGGAAGGACGCTTGTACATGAGCTTGGAGGTAAGA
ATGAGACAGGAAGATAAATTTCGCTCCATCAACCTAGACAACAACGCTTA
TAAGAATCGCGTCGCGCCGTGCATCGGGGGAACGGCTCTGCTGAGGGCTG
TCGGCTTCGCCAAGGAGGAAGGACGCTTGTACATGAGCTTGGAGGTAAGA
back to top