mRNA_H-elongata_contig101226.108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101226.108.1
Unique NamemRNA_H-elongata_contig101226.108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.870e-33
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKARESVESAFTPYYYDTEPYDKNPL 216
            IRASNTSGECSF++E  RG+ +WGGQ+KECVKRR ELS+KATPGCS+KA E V SAF P YYDTEPYDKNPL
Sbjct:  138 IRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 209
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A8J5RQ03_ZIZPA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RQ03_ZIZPA)

HSP 1 Score: 65.1 bits (157), Expect = 4.780e-11
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
            IRA++ SG+C +  E LRG  +  G ++ECVKRR+ +SLK  P CS+ A ++++E+ +   Y DT P+D+ P
Sbjct:  129 IRANHLSGDCHYKRELLRGFMKMRGHEQECVKRRSLMSLKTNPYCSDAAAKDAIEAVWDICYNDTRPFDRAP 200
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A6A4R2U0_LUPAL (Mitochondrial inner membrane protease ATP23 n=3 Tax=Lupinus TaxID=3869 RepID=A0A6A4R2U0_LUPAL)

HSP 1 Score: 63.9 bits (154), Expect = 1.750e-10
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCS-EKARESVESAFTPYYYDTEPYDKNP 213
            IRA++ SG+C +  E LRG  ++GGQ KEC++RR   SL   P C+   A++++E+ +   Y D +P+D+ P
Sbjct:  150 IRAAHLSGDCHYKRELLRGFTKFGGQGKECIRRRVMQSLATNPDCAGTAAKDTIEAVWDKCYNDKQPFDREP 221
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A0D9VFY3_9ORYZ (Mitochondrial inner membrane protease ATP23 n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VFY3_9ORYZ)

HSP 1 Score: 62.4 bits (150), Expect = 2.530e-10
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
            IRA++ SG C +  E LRG  +  GQ++ECVKRR+ +S++  P CS  A +++VE+ +   Y DT P+D+ P
Sbjct:   87 IRANHLSGNCHYKRELLRGFMKIRGQEQECVKRRSLMSVRNNPYCSNSAAKDAVEAVWDICYNDTRPFDRAP 158
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A0D9VFY1_9ORYZ (Mitochondrial inner membrane protease ATP23 n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VFY1_9ORYZ)

HSP 1 Score: 62.4 bits (150), Expect = 6.980e-10
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
            IRA++ SG C +  E LRG  +  GQ++ECVKRR+ +S++  P CS  A +++VE+ +   Y DT P+D+ P
Sbjct:  154 IRANHLSGNCHYKRELLRGFMKIRGQEQECVKRRSLMSVRNNPYCSNSAAKDAVEAVWDICYNDTRPFDRAP 225
[Close]
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A7S4GGD4_9EUGL (Mitochondrial inner membrane protease ATP23 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGD4_9EUGL)

HSP 1 Score: 57.8 bits (138), Expect = 2.770e-8
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 IRASNTSGECSFNLEFLRGNWRWG--GQKKECVKRRTELSLKATPGCSEKARESVESAFTPYYYDTEPYDKNP 213
            IRA+  SG+CS+ LE+ RGNW++    Q K CV+RR + SL   P CS K    V + +   Y D EP+ + P
Sbjct:  124 IRAARLSGDCSWWLEWQRGNWQFDFQSQGKRCVERRAKKSLDLNPKCSAKGYGYVNNVWEACYRDFEPFRRPP 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KCH1_9PHAE8.870e-3377.78Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A8J5RQ03_ZIZPA4.780e-1143.06Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A6A4R2U0_LUPAL1.750e-1040.28Mitochondrial inner membrane protease ATP23 n=3 Ta... [more]
A0A0D9VFY3_9ORYZ2.530e-1043.06Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A0D9VFY1_9ORYZ6.980e-1043.06Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A7S4GGD4_9EUGL2.770e-842.47Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101226contigH-elongata_contig101226:1157..1588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog2880.D8LT69
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsKOG3314@1,KOG3314@2759
Ec32 ortholog descriptionPeptidase M76, ATP23
Ec32 orthologEc-12_005480.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.4060273-CDS-H-elongata_contig101226:1156..12551622929552.4060273-CDS-H-elongata_contig101226:1156..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101226 1157..1255 -
1691679066.6404877-CDS-H-elongata_contig101226:1156..12551691679066.6404877-CDS-H-elongata_contig101226:1156..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101226 1157..1255 -
1622929552.4239488-CDS-H-elongata_contig101226:1444..15881622929552.4239488-CDS-H-elongata_contig101226:1444..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101226 1445..1588 -
1691679066.6644976-CDS-H-elongata_contig101226:1444..15881691679066.6644976-CDS-H-elongata_contig101226:1444..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101226 1445..1588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101226.108.1prot_H-elongata_contig101226.108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101226 1157..1588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101226.108.1

>prot_H-elongata_contig101226.108.1 ID=prot_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKAR
ESVESAFTPYYYDTEPYDKNPLYQRVRVRL*
back to top

mRNA from alignment at H-elongata_contig101226:1157..1588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101226.108.1 ID=mRNA_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig101226:1157..1588- (Himanthalia elongata Himel1 dioecious)
ATTCGAGCCTCGAACACAAGCGGGGAATGTTCCTTCAACTTGGAGTTTCT
ACGGGGCAACTGGAGGTGGGGGGGGCAGAAGAAGGAATGTGTGAAGCGGC
GCACAGAGCTGTCGCTAAAGGCCACGCCGGGGTGCTCAGAAAAGGTAAAT
TGGGCAAGATGCCTCGTCCTCTATCACCTGGATCGTTTGGATTTTCAATA
AATTAAGCTTATTTGTCGCAGTGAAAGTGCAGCGTGAAGATCTTTGTAGA
ATTTCTACCAAAAAGCGCTTTTACCTACGGTCTTACGCCTGTCGATTCCG
TCATCCTTCTCGCCCGTTTTCCTTCAAACGCAGGCTCGAGAGTCCGTGGA
ATCAGCCTTCACGCCATACTATTACGACACGGAGCCGTATGACAAGAACC
CCTTGTATCAGCGTGTGCGCGTCCGTCTTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig101226:1157..1588-

>mRNA_H-elongata_contig101226.108.1 ID=mRNA_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig101226:1157..1588- (Himanthalia elongata Himel1 dioecious)
ATTCGAGCCTCGAACACAAGCGGGGAATGTTCCTTCAACTTGGAGTTTCT
ACGGGGCAACTGGAGGTGGGGGGGGCAGAAGAAGGAATGTGTGAAGCGGC
GCACAGAGCTGTCGCTAAAGGCCACGCCGGGGTGCTCAGAAAAGATTCGA
GCCTCGAACACAAGCGGGGAATGTTCCTTCAACTTGGAGTTTCTACGGGG
CAACTGGAGGTGGGGGGGGCAGAAGAAGGAATGTGTGAAGCGGCGCACAG
AGCTGTCGCTAAAGGCCACGCCGGGGTGCTCAGAAAAGGCTCGAGAGTCC
GTGGAATCAGCCTTCACGCCATACTATTACGACACGGAGCCGTATGACAA
GAACCCCTTGTATCAGCGTGTGCGCGTCCGTCTTTGAGCTCGAGAGTCCG
TGGAATCAGCCTTCACGCCATACTATTACGACACGGAGCCGTATGACAAG
AACCCCTTGTATCAGCGTGTGCGCGTCCGTCTTTGA
back to top