mRNA_H-elongata_contig101226.108.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.870e-33 Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKARESVESAFTPYYYDTEPYDKNPL 216
IRASNTSGECSF++E RG+ +WGGQ+KECVKRR ELS+KATPGCS+KA E V SAF P YYDTEPYDKNPL
Sbjct: 138 IRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNPL 209
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A8J5RQ03_ZIZPA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RQ03_ZIZPA) HSP 1 Score: 65.1 bits (157), Expect = 4.780e-11 Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
IRA++ SG+C + E LRG + G ++ECVKRR+ +SLK P CS+ A ++++E+ + Y DT P+D+ P
Sbjct: 129 IRANHLSGDCHYKRELLRGFMKMRGHEQECVKRRSLMSLKTNPYCSDAAAKDAIEAVWDICYNDTRPFDRAP 200
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A6A4R2U0_LUPAL (Mitochondrial inner membrane protease ATP23 n=3 Tax=Lupinus TaxID=3869 RepID=A0A6A4R2U0_LUPAL) HSP 1 Score: 63.9 bits (154), Expect = 1.750e-10 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCS-EKARESVESAFTPYYYDTEPYDKNP 213
IRA++ SG+C + E LRG ++GGQ KEC++RR SL P C+ A++++E+ + Y D +P+D+ P
Sbjct: 150 IRAAHLSGDCHYKRELLRGFTKFGGQGKECIRRRVMQSLATNPDCAGTAAKDTIEAVWDKCYNDKQPFDREP 221
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A0D9VFY3_9ORYZ (Mitochondrial inner membrane protease ATP23 n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VFY3_9ORYZ) HSP 1 Score: 62.4 bits (150), Expect = 2.530e-10 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
IRA++ SG C + E LRG + GQ++ECVKRR+ +S++ P CS A +++VE+ + Y DT P+D+ P
Sbjct: 87 IRANHLSGNCHYKRELLRGFMKIRGQEQECVKRRSLMSVRNNPYCSNSAAKDAVEAVWDICYNDTRPFDRAP 158
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A0D9VFY1_9ORYZ (Mitochondrial inner membrane protease ATP23 n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VFY1_9ORYZ) HSP 1 Score: 62.4 bits (150), Expect = 6.980e-10 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKA-RESVESAFTPYYYDTEPYDKNP 213
IRA++ SG C + E LRG + GQ++ECVKRR+ +S++ P CS A +++VE+ + Y DT P+D+ P
Sbjct: 154 IRANHLSGNCHYKRELLRGFMKIRGQEQECVKRRSLMSVRNNPYCSNSAAKDAVEAVWDICYNDTRPFDRAP 225
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Match: A0A7S4GGD4_9EUGL (Mitochondrial inner membrane protease ATP23 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGD4_9EUGL) HSP 1 Score: 57.8 bits (138), Expect = 2.770e-8 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1 IRASNTSGECSFNLEFLRGNWRWG--GQKKECVKRRTELSLKATPGCSEKARESVESAFTPYYYDTEPYDKNP 213
IRA+ SG+CS+ LE+ RGNW++ Q K CV+RR + SL P CS K V + + Y D EP+ + P
Sbjct: 124 IRAARLSGDCSWWLEWQRGNWQFDFQSQGKRCVERRAKKSLDLNPKCSAKGYGYVNNVWEACYRDFEPFRRPP 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101226.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101226.108.1 >prot_H-elongata_contig101226.108.1 ID=prot_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp IRASNTSGECSFNLEFLRGNWRWGGQKKECVKRRTELSLKATPGCSEKARback to top mRNA from alignment at H-elongata_contig101226:1157..1588- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101226.108.1 ID=mRNA_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig101226:1157..1588- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101226:1157..1588- >mRNA_H-elongata_contig101226.108.1 ID=mRNA_H-elongata_contig101226.108.1|Name=mRNA_H-elongata_contig101226.108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig101226:1157..1588- (Himanthalia elongata Himel1 dioecious)back to top |