mRNA_H-elongata_contig101223.107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101223.107.1
Unique NamemRNA_H-elongata_contig101223.107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A7T8H1X3_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H1X3_CALRO)

HSP 1 Score: 97.8 bits (242), Expect = 3.110e-22
Identity = 59/144 (40.97%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   25 LKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRTVQYT----SDLYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALN 444
            L+  F      K D  ++  FGL D+ +YR  F+   + +GL+K E +MVV LAT ++SKKRIL ++       W  KV+EFF  R  QYT    +  + VVHIPSC+P VA   WV    +  R   VD F  N  A Q ALN
Sbjct:    5 LEGLFDFGELAKVDPEEFIGFGLKDTHIYRTLFIRLLKDSGLNKAEKVMVVFLATVVRSKKRILDSIDSLSGYSWLPKVKEFFASRICQYTYQETAATFAVVHIPSCMPPVAGLSWVYATVERNRT--VDNFLANTWAGQFALN 146          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W6H2_AMPAM (Uncharacterized protein n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W6H2_AMPAM)

HSP 1 Score: 78.2 bits (191), Expect = 9.540e-15
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   37 FSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELLA 459
            F +E     D A+   FG+ DS VY+  FMEA ++  L  +    +V+LATA+K+K+RI+M +  +F D+ W   V  F++  TV   SD      L  VV+IP CVP + A  W S+   P R    D F  N   AQ+ ++  ++A
Sbjct:   16 FRVESFKDVDPAEMIGFGMKDSHVYKQMFMEATKT--LSAEARTWIVILATAVKNKERIVMELNTRFLDKPWRTAVLNFYMNSTVTKLSDNVGPIRLLPVVNIPGCVPPITALAWESIKPVPDRT--YDNFVSNLWVAQLHIDEAVMA 159          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W1J3_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W1J3_AMPAM)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-14
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   37 FSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELL 456
            F +E        +   FG+ DS VYR  FME+ +  GL  +    +V+LATA+K+++RI+M +  KF D+ W   V  F++ +T    SD      L  VV+IP CVP + A  W S+  + +R    + F  NQ  AQ+ ++ ++L
Sbjct:   23 FKVEALKSVSPTEMIGFGMKDSHVYRQMFMESTK--GLSAEVRTWIVILATAVKNRERIIMELNTKFTDKEWRMPVLNFYMNKTGTKNSDNLGPVKLLPVVNIPGCVPPITALAWKSIKAESERT--YENFVNNQWVAQLYVDADVL 165          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W0B1_AMPAM (Uncharacterized protein n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W0B1_AMPAM)

HSP 1 Score: 70.9 bits (172), Expect = 5.380e-12
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   73 DWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELLA 459
            ++  FG+ DS VYR  FMEA ++  +D +    V++LAT +K+++RIL+ +  KF    W   V+ FF+ +TV   SD      L  VV IP+ +P + A  W  +    +R    + F RNQ  AQ+ +  ++LA
Sbjct:   23 EFIGFGMKDSHVYREMFMEATKT--MDANSRTWVIILATTVKNRERILVELNTKFLTAPWRNTVQNFFMTKTVTKNSDNVGPEKLMPVVSIPAYIPPITALVWKQMKVPTERT--YENFVRNQWVAQLYVLDDVLA 154          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A7T8GQ64_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8GQ64_CALRO)

HSP 1 Score: 65.5 bits (158), Expect = 4.180e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   25 LKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRTVQYTSD 303
            +   F M +    +  D+  FG+MDS  Y ++ +       +  + + MVV LATA+KSKKRIL+AM KF    WY+   +FF   TVQYT +
Sbjct:    4 IMSKFDMNIVRVLNPKDFRDFGIMDSKKYASKLIRILEKEAMTCECSAMVVALATAVKSKKRILVAMKKFAGVSWYKPTFDFFKNSTVQYTYE 96          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: UPI000719DE77 (general transcription factor II-I repeat domain-containing protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DE77)

HSP 1 Score: 54.7 bits (130), Expect = 7.690e-6
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   34 SFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRT 285
            SF++   L  +  D+  FG+ +S +YR  F+E  +++ L+  E  MVV+LATA+K+++RIL A+ KF    W+   R +F   T
Sbjct:   19 SFNLVTMLDINPEDYLGFGMRNSEIYRKMFLE--KTSRLNPVERTMVVVLATAVKNRRRILSALGKFASRPWHDPDRNYFRNST 100          
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W6U9_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W6U9_AMPAM)

HSP 1 Score: 51.6 bits (122), Expect = 7.520e-5
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   73 DWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD 303
            ++  FG+ DS  YR  FMEA ++  +D +    V++LATA+K+++RIL+ +  KF    W   V+ FF+ +TV   SD
Sbjct:   28 EFIGFGMKDSHDYREMFMEATKT--MDANSRTWVIILATAVKNRERILVELNTKFLTAPWRNTVQNFFMTKTVTKNSD 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7T8H1X3_CALRO3.110e-2240.97Uncharacterized protein n=1 Tax=Caligus rogercress... [more]
A0A6A4W6H2_AMPAM9.540e-1535.81Uncharacterized protein n=2 Tax=Amphibalanus amphi... [more]
A0A6A4W1J3_AMPAM1.190e-1434.01Uncharacterized protein n=1 Tax=Amphibalanus amphi... [more]
A0A6A4W0B1_AMPAM5.380e-1234.56Uncharacterized protein n=2 Tax=Amphibalanus amphi... [more]
A0A7T8GQ64_CALRO4.180e-1138.71Uncharacterized protein n=1 Tax=Caligus rogercress... [more]
UPI000719DE777.690e-636.90general transcription factor II-I repeat domain-co... [more]
A0A6A4W6U9_AMPAM7.520e-538.46Uncharacterized protein n=1 Tax=Amphibalanus amphi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101223contigH-elongata_contig101223:1905..2366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.3658936-CDS-H-elongata_contig101223:1904..23661622929552.3658936-CDS-H-elongata_contig101223:1904..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101223 1905..2366 +
1691679066.6274824-CDS-H-elongata_contig101223:1904..23661691679066.6274824-CDS-H-elongata_contig101223:1904..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101223 1905..2366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101223.107.1prot_H-elongata_contig101223.107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101223 1905..2366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101223.107.1

>prot_H-elongata_contig101223.107.1 ID=prot_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MSEEDTRTLKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGL
DKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRTVQYTS
DLYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPE
LLAI
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mRNA from alignment at H-elongata_contig101223:1905..2366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101223.107.1 ID=mRNA_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig101223:1905..2366+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGGAGGACACGAGGACCCTGAAGGAGTCCTTCTCAATGGAGAT GGCCCTGAAGACCGACAGGGCCGACTGGTACGCCTTTGGCCTCATGGACT CGACCGTGTACAGGGCCCGCTTCATGGAGGCGTGCAGGTCCGCCGGGCTG GACAAGGACGAGACCCTGATGGTCGTCATGCTGGCCACCGCCATCAAGTC CAAGAAGCGGATCTTGATGGCGATGGTGAAGTTCAAGGACGAGGTGTGGT ACCGCAAGGTGAGGGAGTTCTTCGTGAAGAGGACAGTGCAGTACACCTCG GACTTGTACACGGTGGTTCACATCCCCTCCTGCGTGCCCTACGTAGCCGC GAGGTGCTGGGTGTCTCTCCTCTACGACCCCAAGAGGAGGGACCCCGTCG ACCAGTTCTGCAGGAACCAGTCGGCCGCCCAGATCGCGCTCAACCCGGAG CTTTTGGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig101223:1905..2366+

>mRNA_H-elongata_contig101223.107.1 ID=mRNA_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig101223:1905..2366+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGGAGGACACGAGGACCCTGAAGGAGTCCTTCTCAATGGAGAT
GGCCCTGAAGACCGACAGGGCCGACTGGTACGCCTTTGGCCTCATGGACT
CGACCGTGTACAGGGCCCGCTTCATGGAGGCGTGCAGGTCCGCCGGGCTG
GACAAGGACGAGACCCTGATGGTCGTCATGCTGGCCACCGCCATCAAGTC
CAAGAAGCGGATCTTGATGGCGATGGTGAAGTTCAAGGACGAGGTGTGGT
ACCGCAAGGTGAGGGAGTTCTTCGTGAAGAGGACAGTGCAGTACACCTCG
GACTTGTACACGGTGGTTCACATCCCCTCCTGCGTGCCCTACGTAGCCGC
GAGGTGCTGGGTGTCTCTCCTCTACGACCCCAAGAGGAGGGACCCCGTCG
ACCAGTTCTGCAGGAACCAGTCGGCCGCCCAGATCGCGCTCAACCCGGAG
CTTTTGGCGATCATGTCGGAGGAGGACACGAGGACCCTGAAGGAGTCCTT
CTCAATGGAGATGGCCCTGAAGACCGACAGGGCCGACTGGTACGCCTTTG
GCCTCATGGACTCGACCGTGTACAGGGCCCGCTTCATGGAGGCGTGCAGG
TCCGCCGGGCTGGACAAGGACGAGACCCTGATGGTCGTCATGCTGGCCAC
CGCCATCAAGTCCAAGAAGCGGATCTTGATGGCGATGGTGAAGTTCAAGG
ACGAGGTGTGGTACCGCAAGGTGAGGGAGTTCTTCGTGAAGAGGACAGTG
CAGTACACCTCGGACTTGTACACGGTGGTTCACATCCCCTCCTGCGTGCC
CTACGTAGCCGCGAGGTGCTGGGTGTCTCTCCTCTACGACCCCAAGAGGA
GGGACCCCGTCGACCAGTTCTGCAGGAACCAGTCGGCCGCCCAGATCGCG
CTCAACCCGGAGCTTTTGGCGATC
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