mRNA_H-elongata_contig101223.107.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A7T8H1X3_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H1X3_CALRO) HSP 1 Score: 97.8 bits (242), Expect = 3.110e-22 Identity = 59/144 (40.97%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 25 LKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRTVQYT----SDLYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALN 444 L+ F K D ++ FGL D+ +YR F+ + +GL+K E +MVV LAT ++SKKRIL ++ W KV+EFF R QYT + + VVHIPSC+P VA WV + R VD F N A Q ALN Sbjct: 5 LEGLFDFGELAKVDPEEFIGFGLKDTHIYRTLFIRLLKDSGLNKAEKVMVVFLATVVRSKKRILDSIDSLSGYSWLPKVKEFFASRICQYTYQETAATFAVVHIPSCMPPVAGLSWVYATVERNRT--VDNFLANTWAGQFALN 146
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W6H2_AMPAM (Uncharacterized protein n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W6H2_AMPAM) HSP 1 Score: 78.2 bits (191), Expect = 9.540e-15 Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 37 FSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELLA 459 F +E D A+ FG+ DS VY+ FMEA ++ L + +V+LATA+K+K+RI+M + +F D+ W V F++ TV SD L VV+IP CVP + A W S+ P R D F N AQ+ ++ ++A Sbjct: 16 FRVESFKDVDPAEMIGFGMKDSHVYKQMFMEATKT--LSAEARTWIVILATAVKNKERIVMELNTRFLDKPWRTAVLNFYMNSTVTKLSDNVGPIRLLPVVNIPGCVPPITALAWESIKPVPDRT--YDNFVSNLWVAQLHIDEAVMA 159
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W1J3_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W1J3_AMPAM) HSP 1 Score: 78.2 bits (191), Expect = 1.190e-14 Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1 Query: 37 FSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELL 456 F +E + FG+ DS VYR FME+ + GL + +V+LATA+K+++RI+M + KF D+ W V F++ +T SD L VV+IP CVP + A W S+ + +R + F NQ AQ+ ++ ++L Sbjct: 23 FKVEALKSVSPTEMIGFGMKDSHVYRQMFMESTK--GLSAEVRTWIVILATAVKNRERIIMELNTKFTDKEWRMPVLNFYMNKTGTKNSDNLGPVKLLPVVNIPGCVPPITALAWKSIKAESERT--YENFVNNQWVAQLYVDADVL 165
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W0B1_AMPAM (Uncharacterized protein n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W0B1_AMPAM) HSP 1 Score: 70.9 bits (172), Expect = 5.380e-12 Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 1 Query: 73 DWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD------LYTVVHIPSCVPYVAARCWVSLLYDPKRRDPVDQFCRNQSAAQIALNPELLA 459 ++ FG+ DS VYR FMEA ++ +D + V++LAT +K+++RIL+ + KF W V+ FF+ +TV SD L VV IP+ +P + A W + +R + F RNQ AQ+ + ++LA Sbjct: 23 EFIGFGMKDSHVYREMFMEATKT--MDANSRTWVIILATTVKNRERILVELNTKFLTAPWRNTVQNFFMTKTVTKNSDNVGPEKLMPVVSIPAYIPPITALVWKQMKVPTERT--YENFVRNQWVAQLYVLDDVLA 154
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A7T8GQ64_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8GQ64_CALRO) HSP 1 Score: 65.5 bits (158), Expect = 4.180e-11 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 25 LKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRTVQYTSD 303 + F M + + D+ FG+MDS Y ++ + + + + MVV LATA+KSKKRIL+AM KF WY+ +FF TVQYT + Sbjct: 4 IMSKFDMNIVRVLNPKDFRDFGIMDSKKYASKLIRILEKEAMTCECSAMVVALATAVKSKKRILVAMKKFAGVSWYKPTFDFFKNSTVQYTYE 96
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: UPI000719DE77 (general transcription factor II-I repeat domain-containing protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DE77) HSP 1 Score: 54.7 bits (130), Expect = 7.690e-6 Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 34 SFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAMVKFKDEVWYRKVREFFVKRT 285 SF++ L + D+ FG+ +S +YR F+E +++ L+ E MVV+LATA+K+++RIL A+ KF W+ R +F T Sbjct: 19 SFNLVTMLDINPEDYLGFGMRNSEIYRKMFLE--KTSRLNPVERTMVVVLATAVKNRRRILSALGKFASRPWHDPDRNYFRNST 100
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Match: A0A6A4W6U9_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W6U9_AMPAM) HSP 1 Score: 51.6 bits (122), Expect = 7.520e-5 Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 73 DWYAFGLMDSTVYRARFMEACRSAGLDKDETLMVVMLATAIKSKKRILMAM-VKFKDEVWYRKVREFFVKRTVQYTSD 303 ++ FG+ DS YR FMEA ++ +D + V++LATA+K+++RIL+ + KF W V+ FF+ +TV SD Sbjct: 28 EFIGFGMKDSHDYREMFMEATKT--MDANSRTWVIILATAVKNRERILVELNTKFLTAPWRNTVQNFFMTKTVTKNSD 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101223.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101223.107.1 >prot_H-elongata_contig101223.107.1 ID=prot_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp MSEEDTRTLKESFSMEMALKTDRADWYAFGLMDSTVYRARFMEACRSAGLback to top mRNA from alignment at H-elongata_contig101223:1905..2366+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101223.107.1 ID=mRNA_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig101223:1905..2366+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101223:1905..2366+ >mRNA_H-elongata_contig101223.107.1 ID=mRNA_H-elongata_contig101223.107.1|Name=mRNA_H-elongata_contig101223.107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig101223:1905..2366+ (Himanthalia elongata Himel1 dioecious)back to top |