mRNA_H-elongata_contig101129.102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101129.102.1
Unique NamemRNA_H-elongata_contig101129.102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.420e-23
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             +N RPQ + HD GFK F+G   PDY   TMS + +D  L  LYG+V  +++ ++   R+ CL +GY G FL  Q+DLTTVAG EYITF  SY+  G   ++ +
Sbjct:  331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRV 434
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.840e-23
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             +N RPQ + HD GFK F+G   PDY   TMS + +D  L  LY  V+ +++ ++   R+ CL +GY G FL  Q+DLTTVAG EYITF  SY+  G   ++ +
Sbjct:  215 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRV 318
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.420e-21
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
            A+N RPQN+ +D G+K  MG+  P Y   TMS   ++ IL  +Y E  + +   +  +R+SC+ LGY GPFL  Q+DLTTVA  EYITF  SYI     TI+ +
Sbjct:  197 AINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRV 300
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.840e-20
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             +N RP  + +D GFK F+G   P Y   TM+A  ++ +L  L+  +++ ++ ++   R+ CL +GY G FL  Q+DLTTVAG EYITF  SY+  G+  +S +
Sbjct:   26 CINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRV 129
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.760e-19
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             +N RP  + +D GFK F+G   P Y   TM++  ++ +L  L+  V + ++ ++   R+ CL +GY G FL  Q+DLTTVAG EYITF  SY+  G+  +S +
Sbjct:   26 CINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRV 129
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BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-18
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             ++ RP+ +  D GFK F+G   P+Y + TM+   ++  L  LYG V  +++ E+   R+  L +GY GPFL  Q+DLTT AG EYITF  +++  G+  ++ +
Sbjct:   22 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 125
[Close]
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.500e-18
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             ++ RP+ +  D GFK F+G   P+Y + TM+   ++  L  LYG V  +++ E+   R+  L +GY GPFL  Q+DLTT AG EYITF  +++  G+  ++ +
Sbjct:  217 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 320
[Close]
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.620e-18
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318
             ++ RP+ +  D GFK F+G   P+Y + TM+   ++  L  LYG V  +++ E+   R+  L +GY GPFL  Q+DLTT AG EYITF  +++  G+  ++ +
Sbjct: 1301 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 1404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KFJ9_9PHAE1.420e-2345.19Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JRT6_9PHAE4.840e-2344.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE9.420e-2145.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE5.840e-2039.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE3.760e-1939.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE2.420e-1837.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.500e-1837.50Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE2.620e-1837.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101129contigH-elongata_contig101129:375..966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101129.102.1prot_H-elongata_contig101129.102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101129 589..933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.8804536-UTR-H-elongata_contig101129:374..4021622929551.8804536-UTR-H-elongata_contig101129:374..402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 375..402 -
1691679066.308491-UTR-H-elongata_contig101129:374..4021691679066.308491-UTR-H-elongata_contig101129:374..402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 375..402 -
1622929551.8926907-UTR-H-elongata_contig101129:583..5881622929551.8926907-UTR-H-elongata_contig101129:583..588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 584..588 -
1691679066.3176765-UTR-H-elongata_contig101129:583..5881691679066.3176765-UTR-H-elongata_contig101129:583..588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 584..588 -
1622929551.9153287-UTR-H-elongata_contig101129:933..9661622929551.9153287-UTR-H-elongata_contig101129:933..966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 934..966 -
1691679066.339932-UTR-H-elongata_contig101129:933..9661691679066.339932-UTR-H-elongata_contig101129:933..966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101129 934..966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.9037938-CDS-H-elongata_contig101129:588..9331622929551.9037938-CDS-H-elongata_contig101129:588..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101129 589..933 -
1691679066.3272479-CDS-H-elongata_contig101129:588..9331691679066.3272479-CDS-H-elongata_contig101129:588..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101129 589..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101129.102.1

>prot_H-elongata_contig101129.102.1 ID=prot_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYR
DSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISALDSLQG
HSPARTPRTTWNNG*
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mRNA from alignment at H-elongata_contig101129:375..966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101129.102.1 ID=mRNA_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at H-elongata_contig101129:375..966- (Himanthalia elongata Himel1 dioecious)
TGAAGTGCCGTGAATTTCCGACCACAAAACATAATGCATGACATCGGCTT
CAAGTTTTTCATGGGTGTTTGGGATCCTGACTACACCTCTCGAACGATGA
GCGCCGAGAGGTACGACGACATTCTGCTGAACCTGTACGGGGAGGTACGG
GAAACGTTGCTCGCGGAAATCCATGAGTACCGAGACTCATGCTTGACGCT
TGGGTACAAGGGGCCTTTTCTTTTGGAACAGGTAGACTTGACAACAGTGG
CCGGCGCTGAGTACATAACATTTTGGGCGTCATATATTCCTCCCGGCGAG
GTGACCATAAGCGCATTGGACTCGCTACAAGGGCATTCCCCGGCTCGCAC
ACCGCGAACGACGTGGAATAATGGTTGAAGAAGGTGAAGAACGCGTCCAA
TCGAGTGCGAAGTAAAATATAAAATTTAAATCTAGATGACGATGTGGGTA
TCGTTTGTGAATGATTTCACGTGCTTAAAAGAAAAAGAAAAAAGTCGGAT
ATTCCGCGTTCACCTCATTGAAGCCACGCTTGCTTGCATTTGTGTCCCTT
GCTTGTCTTAACAGATCATTAAGGAGTGGTTCTCGAAACTCG
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Coding sequence (CDS) from alignment at H-elongata_contig101129:375..966-

>mRNA_H-elongata_contig101129.102.1 ID=mRNA_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig101129:375..966- (Himanthalia elongata Himel1 dioecious)
ATGCATGACATCGGCTTCAAGTTTTTCATGGGTGTTTGGGATCCTGACTA
CACCTCTCGAACGATGAGCGCCGAGAGGTACGACGACATTCTGCTGAACC
TGTACGGGGAGGTACGGGAAACGTTGCTCGCGGAAATCCATGAGTACCGA
GACTCATGCTTGACGCTTGGGTACAAGGGGCCTTTTCTTTTGGAACAGGT
AGACTTGACAACAGTGGCCGGCGCTGAGTACATAACATTTTGGGCGTCAT
ATATTCCTCCCGGCGAGGTGACCATAAGCGCATTGGACTCGCTACAAGGG
CATTCCCCGGCTCGCACACCGCGAACGACGTGGAATAATGGTTGAATGCA
TGACATCGGCTTCAAGTTTTTCATGGGTGTTTGGGATCCTGACTACACCT
CTCGAACGATGAGCGCCGAGAGGTACGACGACATTCTGCTGAACCTGTAC
GGGGAGGTACGGGAAACGTTGCTCGCGGAAATCCATGAGTACCGAGACTC
ATGCTTGACGCTTGGGTACAAGGGGCCTTTTCTTTTGGAACAGGTAGACT
TGACAACAGTGGCCGGCGCTGAGTACATAACATTTTGGGCGTCATATATT
CCTCCCGGCGAGGTGACCATAAGCGCATTGGACTCGCTACAAGGGCATTC
CCCGGCTCGCACACCGCGAACGACGTGGAATAATGGTTGA
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