mRNA_H-elongata_contig101129.102.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.420e-23 Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 +N RPQ + HD GFK F+G PDY TMS + +D L LYG+V +++ ++ R+ CL +GY G FL Q+DLTTVAG EYITF SY+ G ++ + Sbjct: 331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRV 434
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 103 bits (257), Expect = 4.840e-23 Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 +N RPQ + HD GFK F+G PDY TMS + +D L LY V+ +++ ++ R+ CL +GY G FL Q+DLTTVAG EYITF SY+ G ++ + Sbjct: 215 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRV 318
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 9.420e-21 Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 A+N RPQN+ +D G+K MG+ P Y TMS ++ IL +Y E + + + +R+SC+ LGY GPFL Q+DLTTVA EYITF SYI TI+ + Sbjct: 197 AINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRV 300
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 5.840e-20 Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 +N RP + +D GFK F+G P Y TM+A ++ +L L+ +++ ++ ++ R+ CL +GY G FL Q+DLTTVAG EYITF SY+ G+ +S + Sbjct: 26 CINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRV 129
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 3.760e-19 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 +N RP + +D GFK F+G P Y TM++ ++ +L L+ V + ++ ++ R+ CL +GY G FL Q+DLTTVAG EYITF SY+ G+ +S + Sbjct: 26 CINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRV 129
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.420e-18 Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 ++ RP+ + D GFK F+G P+Y + TM+ ++ L LYG V +++ E+ R+ L +GY GPFL Q+DLTT AG EYITF +++ G+ ++ + Sbjct: 22 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 125
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.500e-18 Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 ++ RP+ + D GFK F+G P+Y + TM+ ++ L LYG V +++ E+ R+ L +GY GPFL Q+DLTT AG EYITF +++ G+ ++ + Sbjct: 217 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 320
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.620e-18 Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 7 AVNFRPQNIMHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRDSCLTLGYKGPFLLEQVDLTTVAGAEYITFWASYIPPGEVTISAL 318 ++ RP+ + D GFK F+G P+Y + TM+ ++ L LYG V +++ E+ R+ L +GY GPFL Q+DLTT AG EYITF +++ G+ ++ + Sbjct: 1301 CIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRI 1404 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101129.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101129.102.1 >prot_H-elongata_contig101129.102.1 ID=prot_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MHDIGFKFFMGVWDPDYTSRTMSAERYDDILLNLYGEVRETLLAEIHEYRback to top mRNA from alignment at H-elongata_contig101129:375..966- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101129.102.1 ID=mRNA_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at H-elongata_contig101129:375..966- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101129:375..966- >mRNA_H-elongata_contig101129.102.1 ID=mRNA_H-elongata_contig101129.102.1|Name=mRNA_H-elongata_contig101129.102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig101129:375..966- (Himanthalia elongata Himel1 dioecious)back to top |