mRNA_H-elongata_contig100998.96.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA) HSP 1 Score: 228 bits (581), Expect = 6.290e-72 Identity = 117/158 (74.05%), Postives = 134/158 (84.81%), Query Frame = 2 Query: 14 PDQLEGLMPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 PD+L+ LMPEF+R NAGKAFEFMVE VD++RK AG+ +V+E FAAKSE + MLDA++PHR KFGLK+FAELRAP+G G+ A TLLIQQKTETVDALSKIAQPC G+REVLAAL A +PFCISTTSPKPRVPASITACGLDEYFP +KV SG Sbjct: 44 PDKLDNLMPEFVRDNAGKAFEFMVETVDEERKAAGMDSVEEMFAAKSEPQNMLDAVDPHRKKFGLKSFAELRAPEG-GE-------AATLLIQQKTETVDALSKIAQPCNGVREVLAALTAATVPFCISTTSPKPRVPASITACGLDEYFPPDKVHSG 193
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI) HSP 1 Score: 196 bits (498), Expect = 2.130e-59 Identity = 107/158 (67.72%), Postives = 117/158 (74.05%), Query Frame = 2 Query: 14 PDQLEGLMPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 PD+L+GLMPEF+R NAGKAFEFMVE VD+DRK AGL T+ EAFAAKSE +EMLD LRAP G G+ E LLIQQKTETVDALSKIAQPC G+ EVLAAL AG+ FCISTTSPKPRVPASITAC LDEYFP +KV SG Sbjct: 44 PDKLDGLMPEFVRDNAGKAFEFMVEKVDEDRKAAGLSTISEAFAAKSEPKEMLDXXXXXXXXXXXXXXXXLRAPDG-GEKE-------NLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSG 193
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA) HSP 1 Score: 162 bits (409), Expect = 4.480e-46 Identity = 88/159 (55.35%), Postives = 105/159 (66.04%), Query Frame = 2 Query: 11 APDQLEGLMPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 AP L +PE+IR NAGKAFEFM+E D+DRK+AGL T +E AK E ++ I+ +R KFGL E + TLL QQK ETV+ALSK+AQPCPGI E L L K GIPFCISTTSPKPRVP SI++CGLD +FP +KV SG Sbjct: 43 APSDLITQLPEYIRNNAGKAFEFMMEATDEDRKKAGLDTAEEMRQAKREDPAAVEVIDGYRKKFGLPPLRECKYA--------------TLLEQQKLETVEALSKVAQPCPGIPETLDELVKMGIPFCISTTSPKPRVPVSISSCGLDHHFPADKVHSG 187
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE) HSP 1 Score: 154 bits (388), Expect = 5.870e-44 Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 2 Query: 167 MLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 MLDA++PHR KFGLKTFAELRAP G G+ E LLIQQKTETVDALSKIAQPC G+ EVLAAL AG+ FCISTTSPKPRVPASITAC LDEYFP +KV SG Sbjct: 1 MLDAVDPHRKKFGLKTFAELRAPDG-GEKE-------NLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSG 99
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: C1MV72_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MV72_MICPC) HSP 1 Score: 142 bits (359), Expect = 3.630e-38 Identity = 79/149 (53.02%), Postives = 98/149 (65.77%), Query Frame = 2 Query: 41 EFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 ++IR NAGKAFEFMV+ V++DRK AGL +++EA A+ E+ L ++ RAKFGL AE R G G D +L QK ETVDALS A PC + VLA+L+ GIPFCISTTS KPRVP S+ +CG EYFP EK+ SG Sbjct: 100 DYIRDNAGKAFEFMVDVVEEDRKAAGLSSIEEARASAGEAPATLAVVDAGRAKFGLPPLAETR---GLGKD---------ILTLQKDETVDALSVAAHPCDNVPGVLASLKAKGIPFCISTTSGKPRVPVSVVSCGYTEYFPPEKIHSG 236
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A068B0R3_SACJA (Mannitol-1-phosphatase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A068B0R3_SACJA) HSP 1 Score: 142 bits (358), Expect = 9.230e-38 Identity = 78/151 (51.66%), Postives = 99/151 (65.56%), Query Frame = 2 Query: 35 MPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 M E++R NAGKAFEFM+E V+ DRKE GL + A A +E+ E++ ++ RAK+GLK +LRA D +L QQK ETVDALS +A+P G+ L LR +PF I+TTSPKPRVPASI ACGLD+YFP +KV SG Sbjct: 140 MSEYVRNNAGKAFEFMLEVVEADRKEQGLPDIATARAESAENPEIMKVVDAERAKYGLKPLGDLRAAGTLKD----------ILTQQKEETVDALSVVARPVEGMVNALDELRARKLPFAIATTSPKPRVPASIHACGLDDYFPADKVHSG 280
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A836CC37_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC37_9STRA) HSP 1 Score: 135 bits (341), Expect = 8.220e-37 Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 2 Query: 14 PDQLEGLMPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 P +LEG M ++R NAGKAFEFM+E + +RK+AGL ++ A+ E +L ++ RA GL + T +TLL QQK ETV +LSK+A+P G+R+ L +L +G+PF ISTTSPKPRVP SIT+CG DE+FP KV SG Sbjct: 17 PAELEGQMESYVRNNAGKAFEFMLEACEAERKQAGLQPLE---TAQGEHPHVLALVDVQRAALGLPPL--------------RQTSYDTLLAQQKDETVQSLSKVARPVKGMRDALMSLTASGVPFAISTTSPKPRVPVSITSCGFDEFFPPHKVHSG 157
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A7S1SLQ6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLQ6_9CHLO) HSP 1 Score: 138 bits (347), Expect = 2.450e-36 Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 2 Query: 17 DQLEGLMPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 D E M EFIR NAGKAFEFMV+ ++ R E GL ++E AAKSE +L+ ++ R +FGL+TFA +R+ E +D LIQQK +TV AL IA CPG++E L +L G+ F I+TTS KPRVP S+ A GLD +F EK+ SG Sbjct: 102 DLTEPYMLEFIRENAGKAFEFMVDKCNESRAEVGLPPLEEVRAAKSEDPTLLEFVDKARTRFGLETFATMRSGDSEPED---------FLIQQKNDTVLALKTIATSCPGVKETLKSLTDMGLKFAIATTSGKPRVPVSVIASGLDTWFSPEKIHSG 249
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A6H5KIT4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIT4_9PHAE) HSP 1 Score: 135 bits (341), Expect = 3.010e-35 Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 2 Query: 35 MPEFIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 + E++R NAGKAFEFM+E V+ DRK GL + A A +E +++ ++ R K+GLK ELRA D +L QQK ETVDALS +A+P G+ + L L+ IPF I+TTSPKPRVPAS+ ACGLDEYFP +K+ SG Sbjct: 143 LTEYVRNNAGKAFEFMLEVVEADRKAQGLPDIATARAEGAEDPKIMKVVDEARVKYGLKPLGELRAAGTLKD----------ILTQQKEETVDALSVVARPVEGMVDTLDELKARKIPFAIATTSPKPRVPASVHACGLDEYFPADKIHSG 283
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Match: A0A6S9FK33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FK33_HETAK) HSP 1 Score: 130 bits (326), Expect = 3.170e-33 Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 2 Query: 26 EGLMPE---FIRANAGKAFEFMVENVDKDRKEAGLGTVQEAFAAKSESEEMLDAINPHRAKFGLKTFAELRAPKGEGDDEAKPTVAETLLIQQKTETVDALSKIAQPCPGIREVLAALRKAGIPFCISTTSPKPRVPASITACGLDEYFPKEKVRSG 487 +G++P+ +++ NAGKAFEFM+E ++ R AGL ++ EA E+ ++ A++ R+ GL+TF E+ A G D LL QQK ETV+ LSK+A P PG+ +VLA L +PF I+TTSPKPRVP SIT+CG D YFP +KV SG Sbjct: 95 DGVLPDETAYVQDNAGKAFEFMMEVCEEQRAAAGLPSLAEARG--KENPAVMGAVDAARSALGLRTFPEILAQDGALPD---------LLAQQKEETVEGLSKVAGPNPGVADVLARLTADAVPFAIATTSPKPRVPVSITSCGFDAYFPADKVWSG 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100998.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100998.96.1 >prot_H-elongata_contig100998.96.1 ID=prot_H-elongata_contig100998.96.1|Name=mRNA_H-elongata_contig100998.96.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp RRSSPGSARRLDARVHSRQRGEGLRVHGGKCRQGQEGGRAGDRPRGVCGQback to top mRNA from alignment at H-elongata_contig100998:77..2369+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100998.96.1 ID=mRNA_H-elongata_contig100998.96.1|Name=mRNA_H-elongata_contig100998.96.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2293bp|location=Sequence derived from alignment at H-elongata_contig100998:77..2369+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100998:77..2369+ >mRNA_H-elongata_contig100998.96.1 ID=mRNA_H-elongata_contig100998.96.1|Name=mRNA_H-elongata_contig100998.96.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig100998:77..2369+ (Himanthalia elongata Himel1 dioecious)back to top |