mRNA_H-elongata_contig100990.94.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100990.94.1
Unique NamemRNA_H-elongata_contig100990.94.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.080e-25
Identity = 65/119 (54.62%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   19 MRDRERCRGSRPHREFVDI------------LSSCPTGR--GVTEGVVETKKGA----AFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 306
            MR RER R +RPH EFV +             SS P G   GV  G  + +KGA    + P      RLWINV+DG V   AP  C  VRGGMLCDEPGLGKTITVLALLLRTRG+LPG
Sbjct:    1 MRHRERGRAARPHPEFVPVDIAAVLPAGCRENSSIPEGSKIGVASGGEDWEKGARPDVSLPSPTAGGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGMLPG 119          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.270e-24
Identity = 66/119 (55.46%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   19 MRDRERCRGSRPHREFV--DILSSCPTGR------------GVTEGVVETKKGA----AFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 306
            MR RER R +RPH EFV  DI +  P G             GV  G    +KGA    + P      RLWINV+DG V   AP  C  VRGGMLCDEPGLGKTITVLALLLRTRGLLPG
Sbjct:    1 MRHRERGRAARPHPEFVPVDIAAVLPAGGRENSSVPEGSNIGVASGGGGWEKGARPDVSLPSPTASGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 119          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A1Z9KH43_9BACT (RING-type domain-containing protein (Fragment) n=1 Tax=bacterium TMED181 TaxID=1986654 RepID=A0A1Z9KH43_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.480e-13
Identity = 41/99 (41.41%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    7 GLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            GL WMR RER  GS      +D     P      +G  E+    +  R  W+N + G +  + PG    V GG+LCDEPGLGKT+T LAL+L  RG  P
Sbjct:  295 GLAWMRGRERPAGSISMPPLLDPAWIGPMRTQPIDGTDESMSQGSDDR-YWVNTLTGEMSTNQPGFYADVPGGLLCDEPGLGKTVTALALVLARRGARP 392          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S3CF58_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CF58_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.120e-12
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  103 VTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            ++ G  E K G  F    W+++ DG V  +AP S    RGG LCDEPG+GKT+T ++L+LRT+ LLP
Sbjct:   17 LSPGSREHKTGDGFG--FWVDLFDGKVTFEAPDSHPDCRGGFLCDEPGMGKTVTAISLILRTKSLLP 81          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A2P6VCA5_9CHLO (F-box protein isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCA5_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 6.650e-12
Identity = 43/103 (41.75%), Postives = 52/103 (50.49%), Query Frame = 1
Query:    1 RQGLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRL--WINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            R  + WM+ RER  G  PH   V          G   G      G   PR L  W +   G +R + P     ++GG+ CDEPGLGKTIT LALLLRT G+LP
Sbjct:   62 RAAVLWMQARERAGGVLPH-PTVAAFQCAEVDAGA--GGAACFAGTPLPRGLPCWGDTATGELRMEPPDVMPDLQGGLFCDEPGLGKTITALALLLRTIGVLP 161          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S0KE34_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KE34_MICPS)

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-11
Identity = 41/104 (39.42%), Postives = 51/104 (49.04%), Query Frame = 1
Query:    7 GLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            GL WMR RER  GS         +   P  R +    +E +     P      R W+NV+ G +    P       GG+LCDEPGLGKT+T LAL+L TRG  P
Sbjct:   47 GLAWMRARERPNGSAS-------MPPLPDPRWIGPMRIEPEPDQPSPSGTPSDRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARP 143          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S0NJG6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJG6_MICPS)

HSP 1 Score: 68.9 bits (167), Expect = 2.290e-11
Identity = 41/107 (38.32%), Postives = 52/107 (48.60%), Query Frame = 1
Query:    7 GLWWMRDRERCRGSR-----PHREFVDILSSCPTGRGVTEGVVE---TKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            GL WMR RER  GS      P   ++  +   PT     +G      +        R W+NV+ G +    P       GG+LCDEPGLGKT+T LAL+L TRG  P
Sbjct:   56 GLAWMRARERPSGSASMPPLPDPRWIGPMRIEPTPHHRADGGERRSVSPNNVEASDRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARP 162          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A8J9RLB2_9CHLO (F-box protein At3g54460 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLB2_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 3.140e-11
Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 1
Query:    1 RQGLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            R  L WM +RE+     PH          PT R     + +T  G      LW     G +R D P S   +RGG  CDEPGLGKTIT LAL+LRT+G +P
Sbjct:  234 RAALRWMLEREKEASLMPH----------PTWR-----LFQTNDGLP----LWGCTATGDIRTDEPPSVTDIRGGFFCDEPGLGKTITALALVLRTKGSVP 315          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: I0YTS8_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YTS8_COCSC)

HSP 1 Score: 67.8 bits (164), Expect = 5.780e-11
Identity = 42/98 (42.86%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   10 LWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303
            L WM +RE+  G  P+          PT R        TK G      LW     G +R +AP   R +RGG  CDEPGLGKTIT LAL+LRT+G +P
Sbjct:   84 LRWMLEREKEAGLLPN----------PTWRPFP-----TKDGVP----LWGCAASGGIRIEAPPDVRDLRGGFFCDEPGLGKTITALALILRTKGSVP 162          
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A5BGE7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BGE7_VITVI)

HSP 1 Score: 67.4 bits (163), Expect = 7.950e-11
Identity = 39/93 (41.94%), Postives = 48/93 (51.61%), Query Frame = 1
Query:   16 WMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRG 294
            WM  RER     PH  F+D L               T+ G AF    +IN + G +    P   R  RGGM CDEPGLGKTIT L+L+L+T+G
Sbjct:  292 WMLQRERNAEILPHPLFIDFL---------------TEDGFAF----YINTVTGEIVTGMPPLIRDFRGGMFCDEPGLGKTITALSLILKTQG 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR30_9PHAE3.080e-2554.62Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP67_ECTSI1.270e-2455.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z9KH43_9BACT5.480e-1341.41RING-type domain-containing protein (Fragment) n=1... [more]
A0A7S3CF58_9CHLO2.120e-1247.76Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A2P6VCA5_9CHLO6.650e-1241.75F-box protein isoform X1 n=1 Tax=Micractinium cond... [more]
A0A7S0KE34_MICPS1.600e-1139.42Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0NJG6_MICPS2.290e-1138.32Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A8J9RLB2_9CHLO3.140e-1141.58F-box protein At3g54460 n=1 Tax=Coccomyxa sp. Obi ... [more]
I0YTS8_COCSC5.780e-1142.86Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A5BGE7_VITVI7.950e-1141.94Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100990contigH-elongata_contig100990:373..693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7FP67
KEGG koko:K15505
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.2344768-UTR-H-elongata_contig100990:372..3901622929551.2344768-UTR-H-elongata_contig100990:372..390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100990 373..390 +
1691679065.9155614-UTR-H-elongata_contig100990:372..3901691679065.9155614-UTR-H-elongata_contig100990:372..390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100990 373..390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.2547014-CDS-H-elongata_contig100990:390..6931622929551.2547014-CDS-H-elongata_contig100990:390..693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100990 391..693 +
1691679065.9266639-CDS-H-elongata_contig100990:390..6931691679065.9266639-CDS-H-elongata_contig100990:390..693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100990 391..693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100990.94.1prot_H-elongata_contig100990.94.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100990 391..693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100990.94.1

>prot_H-elongata_contig100990.94.1 ID=prot_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINV
MDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLPGKCLQ
*
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mRNA from alignment at H-elongata_contig100990:373..693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100990.94.1 ID=mRNA_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig100990:373..693+ (Himanthalia elongata Himel1 dioecious)
CGACAGGGGCTGTGGTGGATGAGAGACAGGGAGCGATGTCGTGGCTCGCG CCCTCACCGGGAGTTCGTAGATATATTATCATCGTGTCCGACTGGAAGAG GGGTCACAGAGGGAGTTGTAGAGACGAAGAAGGGCGCGGCGTTTCCTAGG CGGTTGTGGATCAACGTGATGGATGGCTCTGTGCGCGCCGACGCCCCGGG AAGCTGTCGTCCGGTGAGAGGAGGAATGCTTTGCGACGAGCCCGGGCTGG GCAAGACCATCACGGTTCTGGCGCTGCTGCTGCGGACGCGAGGCCTCCTG CCCGGCAAGTGTTTACAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig100990:373..693+

>mRNA_H-elongata_contig100990.94.1 ID=mRNA_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig100990:373..693+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGACAGGGAGCGATGTCGTGGCTCGCGCCCTCACCGGGAGTTCGT
AGATATATTATCATCGTGTCCGACTGGAAGAGGGGTCACAGAGGGAGTTG
TAGAGACGAAGAAGGGCGCGGCGTTTCCTAGGCGGTTGTGGATCAACGTG
ATGGATGGCTCTGTGCGCGCCGACGCCCCGGGAAGCTGTCGTCCGGTGAG
AGGAGGAATGCTTTGCGACGAGCCCGGGCTGGGCAAGACCATCACGGTTC
TGGCGCTGCTGCTGCGGACGCGAGGCCTCCTGCCCGGCAAGTGTTTACAG
TAGATGAGAGACAGGGAGCGATGTCGTGGCTCGCGCCCTCACCGGGAGTT
CGTAGATATATTATCATCGTGTCCGACTGGAAGAGGGGTCACAGAGGGAG
TTGTAGAGACGAAGAAGGGCGCGGCGTTTCCTAGGCGGTTGTGGATCAAC
GTGATGGATGGCTCTGTGCGCGCCGACGCCCCGGGAAGCTGTCGTCCGGT
GAGAGGAGGAATGCTTTGCGACGAGCCCGGGCTGGGCAAGACCATCACGG
TTCTGGCGCTGCTGCTGCGGACGCGAGGCCTCCTGCCCGGCAAGTGTTTA
CAGTAG
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