mRNA_H-elongata_contig100990.94.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.080e-25 Identity = 65/119 (54.62%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 19 MRDRERCRGSRPHREFVDI------------LSSCPTGR--GVTEGVVETKKGA----AFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 306 MR RER R +RPH EFV + SS P G GV G + +KGA + P RLWINV+DG V AP C VRGGMLCDEPGLGKTITVLALLLRTRG+LPG Sbjct: 1 MRHRERGRAARPHPEFVPVDIAAVLPAGCRENSSIPEGSKIGVASGGEDWEKGARPDVSLPSPTAGGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGMLPG 119
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI) HSP 1 Score: 106 bits (265), Expect = 1.270e-24 Identity = 66/119 (55.46%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 19 MRDRERCRGSRPHREFV--DILSSCPTGR------------GVTEGVVETKKGA----AFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 306 MR RER R +RPH EFV DI + P G GV G +KGA + P RLWINV+DG V AP C VRGGMLCDEPGLGKTITVLALLLRTRGLLPG Sbjct: 1 MRHRERGRAARPHPEFVPVDIAAVLPAGGRENSSVPEGSNIGVASGGGGWEKGARPDVSLPSPTASGRLWINVVDGMVWPSAPAPCSEVRGGMLCDEPGLGKTITVLALLLRTRGLLPG 119
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A1Z9KH43_9BACT (RING-type domain-containing protein (Fragment) n=1 Tax=bacterium TMED181 TaxID=1986654 RepID=A0A1Z9KH43_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 5.480e-13 Identity = 41/99 (41.41%), Postives = 52/99 (52.53%), Query Frame = 1 Query: 7 GLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 GL WMR RER GS +D P +G E+ + R W+N + G + + PG V GG+LCDEPGLGKT+T LAL+L RG P Sbjct: 295 GLAWMRGRERPAGSISMPPLLDPAWIGPMRTQPIDGTDESMSQGSDDR-YWVNTLTGEMSTNQPGFYADVPGGLLCDEPGLGKTVTALALVLARRGARP 392
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S3CF58_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CF58_9CHLO) HSP 1 Score: 69.3 bits (168), Expect = 2.120e-12 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 103 VTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 ++ G E K G F W+++ DG V +AP S RGG LCDEPG+GKT+T ++L+LRT+ LLP Sbjct: 17 LSPGSREHKTGDGFG--FWVDLFDGKVTFEAPDSHPDCRGGFLCDEPGMGKTVTAISLILRTKSLLP 81
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A2P6VCA5_9CHLO (F-box protein isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCA5_9CHLO) HSP 1 Score: 70.5 bits (171), Expect = 6.650e-12 Identity = 43/103 (41.75%), Postives = 52/103 (50.49%), Query Frame = 1 Query: 1 RQGLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRL--WINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 R + WM+ RER G PH V G G G PR L W + G +R + P ++GG+ CDEPGLGKTIT LALLLRT G+LP Sbjct: 62 RAAVLWMQARERAGGVLPH-PTVAAFQCAEVDAGA--GGAACFAGTPLPRGLPCWGDTATGELRMEPPDVMPDLQGGLFCDEPGLGKTITALALLLRTIGVLP 161
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S0KE34_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KE34_MICPS) HSP 1 Score: 69.3 bits (168), Expect = 1.600e-11 Identity = 41/104 (39.42%), Postives = 51/104 (49.04%), Query Frame = 1 Query: 7 GLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPR-----RLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 GL WMR RER GS + P R + +E + P R W+NV+ G + P GG+LCDEPGLGKT+T LAL+L TRG P Sbjct: 47 GLAWMRARERPNGSAS-------MPPLPDPRWIGPMRIEPEPDQPSPSGTPSDRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARP 143
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A7S0NJG6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJG6_MICPS) HSP 1 Score: 68.9 bits (167), Expect = 2.290e-11 Identity = 41/107 (38.32%), Postives = 52/107 (48.60%), Query Frame = 1 Query: 7 GLWWMRDRERCRGSR-----PHREFVDILSSCPTGRGVTEGVVE---TKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 GL WMR RER GS P ++ + PT +G + R W+NV+ G + P GG+LCDEPGLGKT+T LAL+L TRG P Sbjct: 56 GLAWMRARERPSGSASMPPLPDPRWIGPMRIEPTPHHRADGGERRSVSPNNVEASDRYWVNVLTGEMSTSPPPHYADSPGGLLCDEPGLGKTVTALALVLATRGARP 162
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A0A8J9RLB2_9CHLO (F-box protein At3g54460 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLB2_9CHLO) HSP 1 Score: 68.6 bits (166), Expect = 3.140e-11 Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 1 Query: 1 RQGLWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 R L WM +RE+ PH PT R + +T G LW G +R D P S +RGG CDEPGLGKTIT LAL+LRT+G +P Sbjct: 234 RAALRWMLEREKEASLMPH----------PTWR-----LFQTNDGLP----LWGCTATGDIRTDEPPSVTDIRGGFFCDEPGLGKTITALALVLRTKGSVP 315
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: I0YTS8_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YTS8_COCSC) HSP 1 Score: 67.8 bits (164), Expect = 5.780e-11 Identity = 42/98 (42.86%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 10 LWWMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRGLLP 303 L WM +RE+ G P+ PT R TK G LW G +R +AP R +RGG CDEPGLGKTIT LAL+LRT+G +P Sbjct: 84 LRWMLEREKEAGLLPN----------PTWRPFP-----TKDGVP----LWGCAASGGIRIEAPPDVRDLRGGFFCDEPGLGKTITALALILRTKGSVP 162
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Match: A5BGE7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BGE7_VITVI) HSP 1 Score: 67.4 bits (163), Expect = 7.950e-11 Identity = 39/93 (41.94%), Postives = 48/93 (51.61%), Query Frame = 1 Query: 16 WMRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVMDGSVRADAPGSCRPVRGGMLCDEPGLGKTITVLALLLRTRG 294 WM RER PH F+D L T+ G AF +IN + G + P R RGGM CDEPGLGKTIT L+L+L+T+G Sbjct: 292 WMLQRERNAEILPHPLFIDFL---------------TEDGFAF----YINTVTGEIVTGMPPLIRDFRGGMFCDEPGLGKTITALSLILKTQG 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100990.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100990.94.1 >prot_H-elongata_contig100990.94.1 ID=prot_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MRDRERCRGSRPHREFVDILSSCPTGRGVTEGVVETKKGAAFPRRLWINVback to top mRNA from alignment at H-elongata_contig100990:373..693+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100990.94.1 ID=mRNA_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig100990:373..693+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100990:373..693+ >mRNA_H-elongata_contig100990.94.1 ID=mRNA_H-elongata_contig100990.94.1|Name=mRNA_H-elongata_contig100990.94.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig100990:373..693+ (Himanthalia elongata Himel1 dioecious)back to top |