mRNA_H-elongata_contig100944.86.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100944.86.1
Unique NamemRNA_H-elongata_contig100944.86.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100944.86.1 vs. uniprot
Match: A0A6H5KVW8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.110e-18
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   31 RHWALCALDRRSKKLMHKTVEMAKALCINVMEVLNDYGIYAMFHELLREAGKSIRLSPL 207
            RHWALCALDRRS  LM +TV MA+AL INV E+LNDY IYAMFHELLREA     + P+
Sbjct:  631 RHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPV 689
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BLAST of mRNA_H-elongata_contig100944.86.1 vs. uniprot
Match: D7FVP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP7_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.110e-18
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   31 RHWALCALDRRSKKLMHKTVEMAKALCINVMEVLNDYGIYAMFHELLREAGKSIRLSPL 207
            RHWALCALDRRS  LM +TV MA+AL INV E+LNDY IYAMFHELLREA     + P+
Sbjct:  582 RHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPV 640
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100944.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVW8_9PHAE4.110e-1869.49Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FVP7_ECTSI4.110e-1869.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100944contigH-elongata_contig100944:205..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.4861617-CDS-H-elongata_contig100944:204..3091622929550.4861617-CDS-H-elongata_contig100944:204..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100944 205..309 -
1691679065.5818079-CDS-H-elongata_contig100944:204..3091691679065.5818079-CDS-H-elongata_contig100944:204..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100944 205..309 -
1622929550.5051043-CDS-H-elongata_contig100944:1046..11481622929550.5051043-CDS-H-elongata_contig100944:1046..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100944 1047..1148 -
1691679065.591905-CDS-H-elongata_contig100944:1046..11481691679065.591905-CDS-H-elongata_contig100944:1046..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100944 1047..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100944.86.1prot_H-elongata_contig100944.86.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100944 205..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100944.86.1

>prot_H-elongata_contig100944.86.1 ID=prot_H-elongata_contig100944.86.1|Name=mRNA_H-elongata_contig100944.86.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MVLLSISARSRHWALCALDRRSKKLMHKTVEMAKALCINVMEVLNDYGIY
AMFHELLREAGKSIRLSPL
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mRNA from alignment at H-elongata_contig100944:205..1148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100944.86.1 ID=mRNA_H-elongata_contig100944.86.1|Name=mRNA_H-elongata_contig100944.86.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=944bp|location=Sequence derived from alignment at H-elongata_contig100944:205..1148- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTGTTGTCTATATCCGCGCGCAGCCGGCACTGGGCGTTGTGCGC
CCTGGACAGGCGAAGCAAAAAGCTCATGCACAAGACGGTGGAGATGGCGA
AGGTGAGACTCACCTGTCCCCCCCCCTCCTGATTCGCCACTTTTTTCTTT
ACAAACCTATGAACTCATTTTTTTTTTGCTTTTTATGACTCTAATAATGA
CCTGACCGATGCAACCGGGTATTTGTGCCGCTGTTTTATTTATGTTTAAT
TTACTATACTATAATATAATATAACCTCTTTGCCTGACGGAGTAATGGGC
GAAATACCCATGAAGGGGTGGGCTAGCGAGCGGGCGGCGCGTTCCGTACG
CTGAAAGGACGAGGAAGCCCGTCGTATTTGATGGTATGTAGTAGGGAACT
TGAGTATCTCTGTTATGAACTTTGTTAATGTTAATACTAATGTTAAATGC
TAATATTAAATGTTAAATACTAGTATTAAATGTTAAATGCTAAAATTAAA
TGTTAAATACTAATATTAAATGTTAAATGCTAATGTTAAATACTAAAATT
AAATGTTAAATACTAATATTAAATGTTAAATGCTAATATTAAATGTTAAA
TGCTAATATTATATGTTAAATGCTAATATTAAATGTTAAATACTAATATT
AAATGTTAAATGCTAATATTAAATGTTAAATGCTAATATTAAATGTTAAA
TACTAAAATTAAATGTTAAATGCTAATATTAATATAATAGTGTTTGACGA
AAAAAAATATTTCCCCTCATCTGGAAATTAGTCAAATCGAATCGCAACCC
GTGTGGCGCCGCCCGCACCAAACCTTATCCACGCCCCAGGCGTTGTGCAT
CAACGTGATGGAGGTGCTGAATGACTACGGCATCTACGCCATGTTCCACG
AGCTGCTGCGGGAGGCGGGTAAGTCAATCCGCTTGTCGCCCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig100944:205..1148-

>mRNA_H-elongata_contig100944.86.1 ID=mRNA_H-elongata_contig100944.86.1|Name=mRNA_H-elongata_contig100944.86.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig100944:205..1148- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTGTTGTCTATATCCGCGCGCAGCCGGCACTGGGCGTTGTGCGC
CCTGGACAGGCGAAGCAAAAAGCTCATGCACAAGACGGTGGAGATGGCGA
AGATGGTGTTGTTGTCTATATCCGCGCGCAGCCGGCACTGGGCGTTGTGC
GCCCTGGACAGGCGAAGCAAAAAGCTCATGCACAAGACGGTGGAGATGGC
GAAGGCGTTGTGCATCAACGTGATGGAGGTGCTGAATGACTACGGCATCT
ACGCCATGTTCCACGAGCTGCTGCGGGAGGCGGGTAAGTCAATCCGCTTG
TCGCCCCTGGCGTTGTGCATCAACGTGATGGAGGTGCTGAATGACTACGG
CATCTACGCCATGTTCCACGAGCTGCTGCGGGAGGCGGGTAAGTCAATCC
GCTTGTCGCCCCTG
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