mRNA_H-elongata_contig100911.83.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100911.83.1
Unique NamemRNA_H-elongata_contig100911.83.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: D8LC14_ECTSI (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC14_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.630e-46
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339
            R+SGAGGQNVNK+STKVE+RFVV EAEWLP DVRLRLAR + GR+ ++GELV+T+QEFRTQKQNR  A+ KLREMI EAWEPAKERKMRTGISK GK +R  +K  R+KVK
Sbjct:  128 RASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRTQKQNRSQALAKLREMINEAWEPAKERKMRTGISKKGKAIRKQDKLHRSKVK 238          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A8J5Y1J9_DIALT (RF_PROK_I domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1J9_DIALT)

HSP 1 Score: 105 bits (263), Expect = 1.020e-26
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342
            RSSG GGQNVNK++TKVE+RF V  A+WLP DV+ RL    S R+   GEL++T+ E R+Q  N  +A++K++E++  A  P KER+MR G+S   K  R+ +K R AKVKQ
Sbjct:   44 RSSGPGGQNVNKVNTKVELRFNVRAADWLPADVKARLIDDNSNRMNKEGELIVTASESRSQSANMDSALRKVQELVDVACIPPKEREMRVGLSAVTKRQRVEDKRRTAKVKQ 155          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A1Z5KKA6_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKA6_FISSO)

HSP 1 Score: 106 bits (264), Expect = 3.680e-26
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342
            RSSGAGGQNVNK++++V++R  V EA W+P +VR RL + Q+ RI+  G L I +QE RTQ  NR AA+QKL+ M+ +AW   KER+MR GIS   KE R   K RR+ VK+
Sbjct:  109 RSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRSDVKE 220          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A1Z5KFY9_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFY9_FISSO)

HSP 1 Score: 106 bits (264), Expect = 3.770e-26
Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339
            RSSGAGGQNVNK++++V++R  V EA W+P +VR RL + Q+ RI+  G L I +QE RTQ  NR AA+QKLR+M+ +AW   KER++R GIS   KE R   K RR+ VK
Sbjct:  110 RSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVK 220          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A7S2PK85_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK85_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.350e-25
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMR 306
            R+SGAGGQNVNK++TKVE+RF ++ A W+PR+VR RL  +++GRI + G   IT QE RTQ QNR  A++KL++++K +W+  K RK+R G++K  KE R
Sbjct:  137 RASGAGGQNVNKVNTKVELRFHIDSANWIPREVRDRLKTNEAGRINNEGYFAITCQENRTQVQNRKEAIKKLQDILKSSWDRPKVRKLRKGLTKKAKENR 236          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: K0R9L2_THAOC (RF_PROK_I domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9L2_THAOC)

HSP 1 Score: 102 bits (255), Expect = 1.510e-24
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342
            R+SGAGGQNVNK++TKVE+RF +  AEW+P +VR RL  +++ RI + G + ITSQE RTQ QNR  AM+KL+++++ +W   K RK R G ++  KE RL  K + +  KQ
Sbjct:  138 RASGAGGQNVNKVNTKVEMRFHLPSAEWIPSEVRDRLQNNEANRINNEGYMSITSQEHRTQMQNRKDAMKKLQDIVRNSWARPKVRKTRKGPTRKAKEKRLENKKKNSLKKQ 249          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: B8C3Q8_THAPS (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q8_THAPS)

HSP 1 Score: 98.6 bits (244), Expect = 3.370e-24
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMR 306
            RSSGAGGQNVNK+ TKVE+RF ++ A W+P +VR RL  +++ RI + G + + SQE+RTQ QNR  A++KL ++++ +W   K RKMR G+S   KE R
Sbjct:   14 RSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENR 113          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: W7T6I3_9STRA (Peptidyl-trna hydrolase mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6I3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.390e-24
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339
            RSSG GGQNVNKL+T+VE+RF VE+A+W+P D+R R    Q  R+   GE V++SQE RTQ +NR   ++KL E +  A    K R MRTG+++  KE RL EK +R++ K
Sbjct:   93 RSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKK 203          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A6U3Q7S5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q7S5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.260e-24
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342
            RSSGAGGQNVNKLSTKVE+RF V  A W+P +VR RL+   + R+   G + + SQEFRTQ  N+   + KL +++  A+   K RKMR G+S+A K   L +K RR+  KQ
Sbjct:  186 RSSGAGGQNVNKLSTKVELRFHVSSANWIPFEVRQRLSSQNANRMNKEGYMTLNSQEFRTQAMNKKDVVNKLEDLVLLAYPRPKVRKMRKGVSQAAKRRNLEDKKRRSSTKQ 297          
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A7S1D533_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D533_CYCTE)

HSP 1 Score: 100 bits (249), Expect = 1.430e-23
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339
            RS G+GGQNVNK++TKVE+RF +++A+WLP +VR R+      RI   G   I S E RTQ+QNR AA  KL+E++  A+   K RK+R GISK  KE  L +K RR +VK
Sbjct:  145 RSGGSGGQNVNKVNTKVELRFKLDDADWLPDEVRDRIREQAPNRINKDGVFNIQSSENRTQQQNRRAAFTKLQEIVLRAYPRPKVRKLRKGISKKAKERNLEDKKRRGQVK 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC14_ECTSI4.630e-4674.77RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J5Y1J9_DIALT1.020e-2650.89RF_PROK_I domain-containing protein n=1 Tax=Diacro... [more]
A0A1Z5KKA6_FISSO3.680e-2653.57Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A1Z5KFY9_FISSO3.770e-2654.05Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A7S2PK85_9STRA1.350e-2553.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0R9L2_THAOC1.510e-2450.00RF_PROK_I domain-containing protein n=2 Tax=Thalas... [more]
B8C3Q8_THAPS3.370e-2451.00RF_PROK_I domain-containing protein (Fragment) n=1... [more]
W7T6I3_9STRA3.390e-2450.45Peptidyl-trna hydrolase mitochondrial-like protein... [more]
A0A6U3Q7S5_9STRA7.260e-2450.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1D533_CYCTE1.430e-2351.35Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100911contigH-elongata_contig100911:810..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.2e-36
Seed eggNOG ortholog2880.D8LC14
KEGG rclassRC01263
KEGG koko:K04121,ko:K15033
KEGG ReactionR05092
KEGG Pathwayko00904,ko01100,ko01110,map00904,map01100,map01110
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0031974,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation release factor activity, codon nonspecific
EggNOG OGsCOG1186@1,KOG3429@2759
EC3.1.1.29,4.2.3.19
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide chain release factor class I/class II
Ec32 orthologEc-20_004060.1
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.266937-CDS-H-elongata_contig100911:809..9911622929550.266937-CDS-H-elongata_contig100911:809..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100911 810..991 +
1691679065.5066314-CDS-H-elongata_contig100911:809..9911691679065.5066314-CDS-H-elongata_contig100911:809..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100911 810..991 +
1622929550.2811363-CDS-H-elongata_contig100911:1351..15111622929550.2811363-CDS-H-elongata_contig100911:1351..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100911 1352..1511 +
1691679065.5191522-CDS-H-elongata_contig100911:1351..15111691679065.5191522-CDS-H-elongata_contig100911:1351..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100911 1352..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100911.83.1prot_H-elongata_contig100911.83.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100911 810..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100911.83.1

>prot_H-elongata_contig100911.83.1 ID=prot_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LFRSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSR
GELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKE
MRLAEKHRRAKVKQ
back to top

mRNA from alignment at H-elongata_contig100911:810..1511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100911.83.1 ID=mRNA_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig100911:810..1511+ (Himanthalia elongata Himel1 dioecious)
CTTTTTAGATCCTCTGGAGCGGGAGGCCAAAACGTTAACAAGCTCAGCAC GAAGGTCGAGATACGCTTCGTCGTCGAGGAGGCAGAGTGGTTGCCGCGTG ATGTGCGCTTGCGGCTAGCGAGGCATCAGAGCGGGCGGATAACCAGCCGC GGAGAGCTCGTGATCACTTCACAGGAGTTCAGGTACATTGGTTAGGCTTT TTCTTCTTCATTCCGAGAAATTATCAGATCACTCCACACTGCCACAGTTA CCCACAGGGATCCTCAAAAAGTTTGCGGAACCCTACACACCGTGTTGTGA AATTGAGAGGGGTAGGTGACTGATTATCGTTTTATAATCGGGAGATCGTG AGGGATGGGTCGCTAAGGGTATTTTATGGGGTGTGGCGCGGAGCGTGAAT GACCGTCACACCCCTTTTACGGTTCTCTTCCGATGCTACTAGAACACGTT TATATATATAATATAATATATATAAAAGAAACATGGATTATTGCATCACG ATTTTTTTGTTCCTGTTTGGTGCCGCGTCGGCAATGCCGCAGAACTCAAA AGCAGAACCGGCACGCGGCGATGCAGAAGCTGCGGGAGATGATCAAGGAG GCGTGGGAGCCGGCCAAGGAGAGGAAAATGCGCACCGGGATTAGCAAGGC TGGCAAAGAGATGCGCTTGGCGGAGAAGCACCGCCGCGCGAAGGTGAAGC AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100911:810..1511+

>mRNA_H-elongata_contig100911.83.1 ID=mRNA_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig100911:810..1511+ (Himanthalia elongata Himel1 dioecious)
CTTTTTAGATCCTCTGGAGCGGGAGGCCAAAACGTTAACAAGCTCAGCAC
GAAGGTCGAGATACGCTTCGTCGTCGAGGAGGCAGAGTGGTTGCCGCGTG
ATGTGCGCTTGCGGCTAGCGAGGCATCAGAGCGGGCGGATAACCAGCCGC
GGAGAGCTCGTGATCACTTCACAGGAGTTCAGCTTTTTAGATCCTCTGGA
GCGGGAGGCCAAAACGTTAACAAGCTCAGCACGAAGGTCGAGATACGCTT
CGTCGTCGAGGAGGCAGAGTGGTTGCCGCGTGATGTGCGCTTGCGGCTAG
CGAGGCATCAGAGCGGGCGGATAACCAGCCGCGGAGAGCTCGTGATCACT
TCACAGGAGTTCAGAACTCAAAAGCAGAACCGGCACGCGGCGATGCAGAA
GCTGCGGGAGATGATCAAGGAGGCGTGGGAGCCGGCCAAGGAGAGGAAAA
TGCGCACCGGGATTAGCAAGGCTGGCAAAGAGATGCGCTTGGCGGAGAAG
CACCGCCGCGCGAAGGTGAAGCAGAACTCAAAAGCAGAACCGGCACGCGG
CGATGCAGAAGCTGCGGGAGATGATCAAGGAGGCGTGGGAGCCGGCCAAG
GAGAGGAAAATGCGCACCGGGATTAGCAAGGCTGGCAAAGAGATGCGCTT
GGCGGAGAAGCACCGCCGCGCGAAGGTGAAGCAG
back to top