mRNA_H-elongata_contig100911.83.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: D8LC14_ECTSI (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC14_ECTSI) HSP 1 Score: 157 bits (398), Expect = 4.630e-46 Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339 R+SGAGGQNVNK+STKVE+RFVV EAEWLP DVRLRLAR + GR+ ++GELV+T+QEFRTQKQNR A+ KLREMI EAWEPAKERKMRTGISK GK +R +K R+KVK Sbjct: 128 RASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRTQKQNRSQALAKLREMINEAWEPAKERKMRTGISKKGKAIRKQDKLHRSKVK 238
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A8J5Y1J9_DIALT (RF_PROK_I domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1J9_DIALT) HSP 1 Score: 105 bits (263), Expect = 1.020e-26 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342 RSSG GGQNVNK++TKVE+RF V A+WLP DV+ RL S R+ GEL++T+ E R+Q N +A++K++E++ A P KER+MR G+S K R+ +K R AKVKQ Sbjct: 44 RSSGPGGQNVNKVNTKVELRFNVRAADWLPADVKARLIDDNSNRMNKEGELIVTASESRSQSANMDSALRKVQELVDVACIPPKEREMRVGLSAVTKRQRVEDKRRTAKVKQ 155
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A1Z5KKA6_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKA6_FISSO) HSP 1 Score: 106 bits (264), Expect = 3.680e-26 Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342 RSSGAGGQNVNK++++V++R V EA W+P +VR RL + Q+ RI+ G L I +QE RTQ NR AA+QKL+ M+ +AW KER+MR GIS KE R K RR+ VK+ Sbjct: 109 RSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRSDVKE 220
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A1Z5KFY9_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFY9_FISSO) HSP 1 Score: 106 bits (264), Expect = 3.770e-26 Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339 RSSGAGGQNVNK++++V++R V EA W+P +VR RL + Q+ RI+ G L I +QE RTQ NR AA+QKLR+M+ +AW KER++R GIS KE R K RR+ VK Sbjct: 110 RSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVK 220
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A7S2PK85_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK85_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.350e-25 Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMR 306 R+SGAGGQNVNK++TKVE+RF ++ A W+PR+VR RL +++GRI + G IT QE RTQ QNR A++KL++++K +W+ K RK+R G++K KE R Sbjct: 137 RASGAGGQNVNKVNTKVELRFHIDSANWIPREVRDRLKTNEAGRINNEGYFAITCQENRTQVQNRKEAIKKLQDILKSSWDRPKVRKLRKGLTKKAKENR 236
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: K0R9L2_THAOC (RF_PROK_I domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9L2_THAOC) HSP 1 Score: 102 bits (255), Expect = 1.510e-24 Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342 R+SGAGGQNVNK++TKVE+RF + AEW+P +VR RL +++ RI + G + ITSQE RTQ QNR AM+KL+++++ +W K RK R G ++ KE RL K + + KQ Sbjct: 138 RASGAGGQNVNKVNTKVEMRFHLPSAEWIPSEVRDRLQNNEANRINNEGYMSITSQEHRTQMQNRKDAMKKLQDIVRNSWARPKVRKTRKGPTRKAKEKRLENKKKNSLKKQ 249
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: B8C3Q8_THAPS (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q8_THAPS) HSP 1 Score: 98.6 bits (244), Expect = 3.370e-24 Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMR 306 RSSGAGGQNVNK+ TKVE+RF ++ A W+P +VR RL +++ RI + G + + SQE+RTQ QNR A++KL ++++ +W K RKMR G+S KE R Sbjct: 14 RSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENR 113
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: W7T6I3_9STRA (Peptidyl-trna hydrolase mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6I3_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.390e-24 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339 RSSG GGQNVNKL+T+VE+RF VE+A+W+P D+R R Q R+ GE V++SQE RTQ +NR ++KL E + A K R MRTG+++ KE RL EK +R++ K Sbjct: 93 RSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKK 203
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A6U3Q7S5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q7S5_9STRA) HSP 1 Score: 102 bits (253), Expect = 7.260e-24 Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVKQ 342 RSSGAGGQNVNKLSTKVE+RF V A W+P +VR RL+ + R+ G + + SQEFRTQ N+ + KL +++ A+ K RKMR G+S+A K L +K RR+ KQ Sbjct: 186 RSSGAGGQNVNKLSTKVELRFHVSSANWIPFEVRQRLSSQNANRMNKEGYMTLNSQEFRTQAMNKKDVVNKLEDLVLLAYPRPKVRKMRKGVSQAAKRRNLEDKKRRSSTKQ 297
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Match: A0A7S1D533_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D533_CYCTE) HSP 1 Score: 100 bits (249), Expect = 1.430e-23 Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1 Query: 7 RSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRGELVITSQEFRTQKQNRHAAMQKLREMIKEAWEPAKERKMRTGISKAGKEMRLAEKHRRAKVK 339 RS G+GGQNVNK++TKVE+RF +++A+WLP +VR R+ RI G I S E RTQ+QNR AA KL+E++ A+ K RK+R GISK KE L +K RR +VK Sbjct: 145 RSGGSGGQNVNKVNTKVELRFKLDDADWLPDEVRDRIREQAPNRINKDGVFNIQSSENRTQQQNRRAAFTKLQEIVLRAYPRPKVRKLRKGISKKAKERNLEDKKRRGQVK 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100911.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100911.83.1 >prot_H-elongata_contig100911.83.1 ID=prot_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp LFRSSGAGGQNVNKLSTKVEIRFVVEEAEWLPRDVRLRLARHQSGRITSRback to top mRNA from alignment at H-elongata_contig100911:810..1511+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100911.83.1 ID=mRNA_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig100911:810..1511+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100911:810..1511+ >mRNA_H-elongata_contig100911.83.1 ID=mRNA_H-elongata_contig100911.83.1|Name=mRNA_H-elongata_contig100911.83.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig100911:810..1511+ (Himanthalia elongata Himel1 dioecious)back to top |