mRNA_H-elongata_contig100875.79.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100875.79.1
Unique NamemRNA_H-elongata_contig100875.79.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 5.380e-63
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQGAD 309
            KK IESMNARLQLVMKSGKASLGYKSTIKSMR+TRAKMVLISNNCPPLRKSEIEY AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITD GDSDILRQGA+
Sbjct:    8 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 110
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.250e-53
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK IES+N RLQLVM+SGKASLGYK T+K MR ++AKM++ISNNCPPLRKSEIEY A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITD GDSDILR
Sbjct:    8 KKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI)

HSP 1 Score: 167 bits (423), Expect = 7.530e-52
Identity = 77/99 (77.78%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +ES+N+RLQLVM+SGKASLGYK+TIK++RNT+AK+V+IS+NCPPLRKSEIEY AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct:   10 KKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA)

HSP 1 Score: 160 bits (404), Expect = 5.930e-49
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
            KK  ES+N+RL LVMKSGK +LGYKST+KS+R  +AK+++IS NCPPLRKSEIEY AMLAK  VHHYTG+N DLGTACGKYFRVS LSITDPGDSDI+RQ
Sbjct:    8 KKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.570e-48
Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +E+MN++LQLVMKSGKASLGYKS+IK++RN +AK+VL+S NCPPLR+SEIEY AMLAK  VHHY G+NTDLGTACGKYFRV VL +T+ GDS+ILR
Sbjct:   47 KKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILR 145
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A482SS92_9ARCH (50S ribosomal protein L30e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS92_9ARCH)

HSP 1 Score: 157 bits (398), Expect = 5.870e-48
Identity = 71/99 (71.72%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK +ES+N ++QLVMKSGK +LGYK+T+K++R+ +AKMV+ISNN P LRKSE+EY AMLAKC++HHY+G+N+DLGTACGK+FRVS++SITDPGDSDILR
Sbjct:   17 KKNVESINGKIQLVMKSGKTALGYKTTLKALRSNKAKMVVISNNTPTLRKSEVEYYAMLAKCSIHHYSGNNSDLGTACGKFFRVSMMSITDPGDSDILR 115
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A0G4J7S9_PLABS (Ribosomal_L7Ae domain-containing protein n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4J7S9_PLABS)

HSP 1 Score: 155 bits (392), Expect = 4.120e-47
Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK IES+N+RLQLV+KSGK SLGYKST+KS+R  +AK+V+I+NNCP LRKSEIEY AMLAK  VHHY+G+N +LGT+CGKYFRVS L+ITDPGDSDI+R
Sbjct:   11 KKAIESINSRLQLVVKSGKYSLGYKSTLKSLRMGKAKLVIIANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTSCGKYFRVSCLTITDPGDSDIIR 109
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.040e-47
Identity = 71/100 (71.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
            KK +ES+N+++QLVMKSGK +LGYK+TIK++R  +AKMVLI++N PPLRKSE+EY AMLAKC VHHY G+N++LGTACGK++RVS++SITD GDSDILRQ
Sbjct:   13 KKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A6S7GSE1_PARCT (60S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7GSE1_PARCT)

HSP 1 Score: 155 bits (391), Expect = 6.630e-47
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            KK  ES+N+RLQLVMKSGK +LGYKST+K++R  +AK+V+ISNN P LRKSEIEY AMLAK  VHHYTG+N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct:    8 KKSQESINSRLQLVMKSGKYTLGYKSTLKTLRQGKAKLVIISNNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIR 106
[Close]
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S1A6B9_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A6B9_NOCSC)

HSP 1 Score: 154 bits (389), Expect = 1.180e-46
Identity = 72/95 (75.79%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:   13 ESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
            E++N RL+LVMKSGK +LG+KST+K++RN +AK+VLI++NCPPLRKSEIEY AML+K  VHHYTG N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct:   13 ENINTRLKLVMKSGKYNLGHKSTMKTLRNGKAKLVLIASNCPPLRKSEIEYYAMLSKTGVHHYTGENNELGTACGKYFRVSVLSITDPGDSDIIR 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN84_ECTSI5.380e-6395.15Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXX2_9STRA6.250e-5381.82Ribosomal protein rpl30 n=1 Tax=Tribonema minus Ta... [more]
A0A812PA55_SYMMI7.530e-5277.78RPL30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
L8GX53_ACACA5.930e-4977.0060S ribosomal protein, putative n=1 Tax=Acanthamoe... [more]
A0A7S2USR9_9STRA5.570e-4874.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SS92_9ARCH5.870e-4871.7250S ribosomal protein L30e n=1 Tax=archaeon TaxID=... [more]
A0A0G4J7S9_PLABS4.120e-4774.75Ribosomal_L7Ae domain-containing protein n=2 Tax=P... [more]
A0A7S3HF33_9STRA6.040e-4771.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6S7GSE1_PARCT6.630e-4776.7760S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID... [more]
A0A7S1A6B9_NOCSC1.180e-4675.79Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100875contigH-elongata_contig100875:1278..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog2880.D8LN84
Preferred nameRPL30
KEGG koko:K02866,ko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0001889,GO:0001906,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006448,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007275,GO:0007399,GO:0007422,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031640,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035368,GO:0035821,GO:0036002,GO:0040007,GO:0042254,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045901,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048732,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061008,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1904569,GO:1904571,GO:1990904,GO:2000112
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG1911@1,KOG2988@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description60S ribosomal protein L30
Ec32 orthologEc-05_003900.1
Exons1
Model size312
Cds size294
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.867724-UTR-H-elongata_contig100875:1277..12951622929549.867724-UTR-H-elongata_contig100875:1277..1295Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100875 1278..1295 +
1691679065.3684907-UTR-H-elongata_contig100875:1277..12951691679065.3684907-UTR-H-elongata_contig100875:1277..1295Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100875 1278..1295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.8830857-CDS-H-elongata_contig100875:1295..15891622929549.8830857-CDS-H-elongata_contig100875:1295..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100875 1296..1589 +
1691679065.3802366-CDS-H-elongata_contig100875:1295..15891691679065.3802366-CDS-H-elongata_contig100875:1295..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100875 1296..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100875.79.1prot_H-elongata_contig100875.79.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100875 1296..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100875.79.1

>prot_H-elongata_contig100875.79.1 ID=prot_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYL
AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQGAD*
back to top

mRNA from alignment at H-elongata_contig100875:1278..1589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100875.79.1 ID=mRNA_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig100875:1278..1589+ (Himanthalia elongata Himel1 dioecious)
AAGAAGGTGATCGAGTCGATGAATGCCCGCCTCCAGCTGGTAATGAAGTC
CGGCAAGGCGTCGCTGGGGTACAAGTCGACTATCAAATCGATGCGAAACA
CTCGCGCGAAGATGGTCCTGATCTCCAACAACTGCCCCCCGCTCCGAAAG
TCCGAGATCGAGTACCTGGCAATGCTCGCCAAGTGCGCCGTCCACCACTA
CACGGGGTCCAACACTGACCTCGGTACCGCCTGCGGAAAATACTTTCGCG
TGTCCGTGCTGTCCATCACAGACCCCGGAGACTCGGACATCCTTCGCCAG
GGTGCCGATTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100875:1278..1589+

>mRNA_H-elongata_contig100875.79.1 ID=mRNA_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig100875:1278..1589+ (Himanthalia elongata Himel1 dioecious)
ATGAATGCCCGCCTCCAGCTGGTAATGAAGTCCGGCAAGGCGTCGCTGGG
GTACAAGTCGACTATCAAATCGATGCGAAACACTCGCGCGAAGATGGTCC
TGATCTCCAACAACTGCCCCCCGCTCCGAAAGTCCGAGATCGAGTACCTG
GCAATGCTCGCCAAGTGCGCCGTCCACCACTACACGGGGTCCAACACTGA
CCTCGGTACCGCCTGCGGAAAATACTTTCGCGTGTCCGTGCTGTCCATCA
CAGACCCCGGAGACTCGGACATCCTTCGCCAGGGTGCCGATTAGATGAAT
GCCCGCCTCCAGCTGGTAATGAAGTCCGGCAAGGCGTCGCTGGGGTACAA
GTCGACTATCAAATCGATGCGAAACACTCGCGCGAAGATGGTCCTGATCT
CCAACAACTGCCCCCCGCTCCGAAAGTCCGAGATCGAGTACCTGGCAATG
CTCGCCAAGTGCGCCGTCCACCACTACACGGGGTCCAACACTGACCTCGG
TACCGCCTGCGGAAAATACTTTCGCGTGTCCGTGCTGTCCATCACAGACC
CCGGAGACTCGGACATCCTTCGCCAGGGTGCCGATTAG
back to top