mRNA_H-elongata_contig100842.76.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100842.76.1
Unique NamemRNA_H-elongata_contig100842.76.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100842.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100842contigH-elongata_contig100842:1237..1772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100842.76.1prot_H-elongata_contig100842.76.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100842 1254..1772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.4096787-UTR-H-elongata_contig100842:1236..12531622929549.4096787-UTR-H-elongata_contig100842:1236..1253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100842 1237..1253 +
1691679065.112284-UTR-H-elongata_contig100842:1236..12531691679065.112284-UTR-H-elongata_contig100842:1236..1253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100842 1237..1253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.4226327-CDS-H-elongata_contig100842:1253..15221622929549.4226327-CDS-H-elongata_contig100842:1253..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100842 1254..1522 +
1691679065.1244094-CDS-H-elongata_contig100842:1253..15221691679065.1244094-CDS-H-elongata_contig100842:1253..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100842 1254..1522 +
1622929549.436105-CDS-H-elongata_contig100842:1693..17721622929549.436105-CDS-H-elongata_contig100842:1693..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100842 1694..1772 +
1691679065.1340437-CDS-H-elongata_contig100842:1693..17721691679065.1340437-CDS-H-elongata_contig100842:1693..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100842 1694..1772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100842.76.1

>prot_H-elongata_contig100842.76.1 ID=prot_H-elongata_contig100842.76.1|Name=mRNA_H-elongata_contig100842.76.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MYLSSPFQQSKINRICLPSARGQLNKENNFTCPRSRLRIWSRETASAVPS
RVSLLILSTQVESGAYSRDPLDPPVFRDGVHLYRHPPMTSPPQGIRIEQA
VEGMHQRTRAARLGHV
back to top

mRNA from alignment at H-elongata_contig100842:1237..1772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100842.76.1 ID=mRNA_H-elongata_contig100842.76.1|Name=mRNA_H-elongata_contig100842.76.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=536bp|location=Sequence derived from alignment at H-elongata_contig100842:1237..1772+ (Himanthalia elongata Himel1 dioecious)
TTTTCGCAACTGTATTTATGTATTTGTCGTCACCCTTTCAGCAGAGTAAG
ATCAACCGGATTTGCTTGCCTTCTGCTCGTGGTCAGCTGAACAAGGAAAA
TAATTTTACTTGTCCCCGTTCGCGCCTGAGAATTTGGTCTCGGGAGACGG
CTTCAGCAGTCCCGTCCCGCGTCAGCCTGCTCATTCTCTCAACTCAGGTT
GAATCTGGTGCTTACTCTCGGGATCCTCTCGATCCTCCCGTTTTCCGCGA
CGGCGTCCATCTCTACCGTCATCCGCCTATGACGAGGTGTGTCGCCGTGT
CTCCTTCCTAAGCATCGAACCCCCCATGAACTCCGAAAATCCCCGTCCCG
TATCCCGTATCCCGCGACCGCCTTAATAATACTACGAAACCGAATGACAC
ACCAGCACCAGCACCAGCACAATTTTAATAGAGCGGTCGTTGTGGTCGTT
ACGACAGCCCTCCACAGGGTATCAGAATCGAGCAAGCTGTTGAAGGAATG
CATCAACGCACGCGAGCAGCTCGACTTGGCCATGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100842:1237..1772+

>mRNA_H-elongata_contig100842.76.1 ID=mRNA_H-elongata_contig100842.76.1|Name=mRNA_H-elongata_contig100842.76.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig100842:1237..1772+ (Himanthalia elongata Himel1 dioecious)
ATGTATTTGTCGTCACCCTTTCAGCAGAGTAAGATCAACCGGATTTGCTT
GCCTTCTGCTCGTGGTCAGCTGAACAAGGAAAATAATTTTACTTGTCCCC
GTTCGCGCCTGAGAATTTGGTCTCGGGAGACGGCTTCAGCAGTCCCGTCC
CGCGTCAGCCTGCTCATTCTCTCAACTCAGGTTGAATCTGGTGCTTACTC
TCGGGATCCTCTCGATCCTCCCGTTTTCCGCGACGGCGTCCATCTCTACC
GTCATCCGCCTATGACGAGATGTATTTGTCGTCACCCTTTCAGCAGAGTA
AGATCAACCGGATTTGCTTGCCTTCTGCTCGTGGTCAGCTGAACAAGGAA
AATAATTTTACTTGTCCCCGTTCGCGCCTGAGAATTTGGTCTCGGGAGAC
GGCTTCAGCAGTCCCGTCCCGCGTCAGCCTGCTCATTCTCTCAACTCAGG
TTGAATCTGGTGCTTACTCTCGGGATCCTCTCGATCCTCCCGTTTTCCGC
GACGGCGTCCATCTCTACCGTCATCCGCCTATGACGAGCCCTCCACAGGG
TATCAGAATCGAGCAAGCTGTTGAAGGAATGCATCAACGCACGCGAGCAG
CTCGACTTGGCCATGTCCCCTCCACAGGGTATCAGAATCGAGCAAGCTGT
TGAAGGAATGCATCAACGCACGCGAGCAGCTCGACTTGGCCATGTC
back to top