mRNA_H-elongata_contig100808.74.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100808.74.1
Unique NamemRNA_H-elongata_contig100808.74.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: D7FP16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP16_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-20
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTRWAPGGFVQLWVKIIYEPLRGGVF 222
            V+NFLTVPRQLE+LLLFGMLVCLDTFLYVTTFLPIRI+IGVVS+LFSL+TR       +    ++Y+ +RG  F
Sbjct:  676 VRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGVVSSLFSLLTRRRRPSVNR---PLVYDWMRGATF 746
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A6H5KXP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP0_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 9.500e-20
Identity = 46/51 (90.20%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            V+NFLTVPRQLE+LLLFGMLVCLDTFLYVTTFLPIRI+IGVVS+LFSL+TR
Sbjct:  633 VRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGVVSSLFSLLTR 683
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A8J4Q240_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q240_9MYCE)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTRWAPGGFVQLWVKIIYEPLR 210
            V NF+ VP +LEKL++FG  VC D+FLY+ TFLPIRI+I + S++     R    G   + + +IY  L 
Sbjct:  281 VYNFVHVPIELEKLIIFGFFVCFDSFLYLFTFLPIRIVIAIYSSMLYHYIR----GQAVIKLYVIYNVLE 346
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: UPI00106B1B2F (transmembrane anterior posterior transformation protein 1 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B1B2F)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVT-RWAPGGFVQLWVKIIYEPLRGGVFL 225
            V  F+  PR+LEKL+ FG L+CLD FL+V T+LP+R+++ V+  L +++  ++   GF  L    I + LRG + L
Sbjct:  219 VYTFMKTPRELEKLMWFGFLLCLDCFLFVFTYLPVRVLLAVLKLLGNVICLKFLRRGFSLLESHQICDLLRGLILL 294
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A1Y2AQA9_9FUNG (DUF747-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AQA9_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 2.050e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            V+NFL VP +LEK L +G+L+CLD+FLY+ T LPIR+++ V S +  L  +
Sbjct:  410 VQNFLAVPVELEKFLYYGILICLDSFLYIFTILPIRLVVAVKSMIKGLFVK 460
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A1Y1XAV7_9FUNG (DUF747-domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XAV7_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.790e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            ++NFL VP +LEK L +G+L+CLD+FLY+ T LPIR+I+ V S +  L  +
Sbjct:  355 IQNFLAVPVELEKFLNYGILICLDSFLYIFTILPIRLIVAVFSMIKGLFVK 405
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A109FBV4_9BASI (DUF747-domain-containing protein (Fragment) n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A109FBV4_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 3.720e-7
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIG 120
            V NFLTVPR+LEK+++FG  VCLD+FLY  T LP+R ++ 
Sbjct:   28 VTNFLTVPRELEKIIMFGSFVCLDSFLYTFTILPLRAVVA 67
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A1Y2FJ93_9FUNG (DUF747-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FJ93_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 3.780e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            V+NFL VP +LEK L +G+L+CLD+FLY+ T LPIR+++ V S +  L  +
Sbjct:  222 VQNFLAVPVELEKFLNYGILICLDSFLYIFTILPIRLVVAVKSMIKGLFVK 272
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A507DCX2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DCX2_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 3.810e-7
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            V+NFL+VP++LEK +LFG  +CLD+FLY+ T LP+RI I + + + +L  R
Sbjct:  353 VQNFLSVPQELEKFMLFGYSICLDSFLYIFTILPLRICIALFALIRALFIR 403
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BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Match: A0A1Y3N6M4_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N6M4_PIRSE)

HSP 1 Score: 55.1 bits (131), Expect = 5.010e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVTR 153
            ++NFL VP +LEK L +G+L+CLD+FLY  T LPIR+II V S +  L  +
Sbjct:   48 IQNFLAVPVELEKFLNYGILICLDSFLYTFTILPIRLIIAVFSMIKGLFVK 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100808.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP16_ECTSI1.090e-2067.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXP0_9PHAE9.500e-2090.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J4Q240_9MYCE1.480e-744.29Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00106B1B2F1.480e-740.79transmembrane anterior posterior transformation pr... [more]
A0A1Y2AQA9_9FUNG2.050e-750.98DUF747-domain-containing protein n=1 Tax=Neocallim... [more]
A0A1Y1XAV7_9FUNG2.790e-750.98DUF747-domain-containing protein n=1 Tax=Anaeromyc... [more]
A0A109FBV4_9BASI3.720e-760.00DUF747-domain-containing protein (Fragment) n=1 Ta... [more]
A0A1Y2FJ93_9FUNG3.780e-750.98DUF747-domain-containing protein n=1 Tax=Neocallim... [more]
A0A507DCX2_9FUNG3.810e-750.98Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A1Y3N6M4_PIRSE5.010e-752.94Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100808contigH-elongata_contig100808:203..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue5.6e-17
Seed eggNOG ortholog2880.D7FP16
Preferred nameTAPT1
GOsGO:0000003,GO:0001501,GO:0001503,GO:0001701,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006457,GO:0006935,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0008104,GO:0008150,GO:0009605,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009856,GO:0009888,GO:0009987,GO:0010154,GO:0010183,GO:0010638,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016020,GO:0016021,GO:0016520,GO:0022414,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031344,GO:0031346,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034975,GO:0035437,GO:0036064,GO:0038023,GO:0040011,GO:0042175,GO:0042221,GO:0042330,GO:0042995,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044706,GO:0045185,GO:0045724,GO:0048316,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048706,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048868,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051641,GO:0051651,GO:0051704,GO:0051716,GO:0060089,GO:0060485,GO:0060491,GO:0061035,GO:0061036,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071944,GO:0072595,GO:0098827,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1902017,GO:1902115,GO:1902117,GO:1903010,GO:1903012,GO:1904888,GO:2000026
EggNOG free text desc.positive regulation of bone development
EggNOG OGsKOG2490@1,KOG2490@2759
Ec32 ortholog descriptionMembrane protein,Tapt1/CMV receptor
Ec32 orthologEc-05_001770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.2594469-CDS-H-elongata_contig100808:202..4301622929549.2594469-CDS-H-elongata_contig100808:202..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100808 203..430 -
1691679065.0568507-CDS-H-elongata_contig100808:202..4301691679065.0568507-CDS-H-elongata_contig100808:202..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100808 203..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100808.74.1prot_H-elongata_contig100808.74.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100808 203..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100808.74.1

>prot_H-elongata_contig100808.74.1 ID=prot_H-elongata_contig100808.74.1|Name=mRNA_H-elongata_contig100808.74.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
VKNFLTVPRQLEKLLLFGMLVCLDTFLYVTTFLPIRIIIGVVSALFSLVT
RWAPGGFVQLWVKIIYEPLRGGVFL*
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mRNA from alignment at H-elongata_contig100808:203..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100808.74.1 ID=mRNA_H-elongata_contig100808.74.1|Name=mRNA_H-elongata_contig100808.74.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig100808:203..430- (Himanthalia elongata Himel1 dioecious)
GTGAAGAATTTTCTGACAGTCCCGAGGCAGCTGGAGAAGCTTCTTCTGTT
CGGCATGCTGGTCTGCCTGGACACGTTTTTGTACGTGACAACTTTTCTGC
CGATCAGGATTATTATCGGCGTCGTGTCCGCCTTGTTCTCCCTCGTCACC
AGGTGGGCCCCTGGCGGCTTCGTACAGCTTTGGGTTAAAATAATTTACGA
GCCTCTACGTGGAGGCGTTTTTCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig100808:203..430-

>mRNA_H-elongata_contig100808.74.1 ID=mRNA_H-elongata_contig100808.74.1|Name=mRNA_H-elongata_contig100808.74.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig100808:203..430- (Himanthalia elongata Himel1 dioecious)
GTGAAGAATTTTCTGACAGTCCCGAGGCAGCTGGAGAAGCTTCTTCTGTT
CGGCATGCTGGTCTGCCTGGACACGTTTTTGTACGTGACAACTTTTCTGC
CGATCAGGATTATTATCGGCGTCGTGTCCGCCTTGTTCTCCCTCGTCACC
AGGTGGGCCCCTGGCGGCTTCGTACAGCTTTGGGTTAAAATAATTTACGA
GCCTCTACGTGGAGGCGTTTTTCTGTAAGTGAAGAATTTTCTGACAGTCC
CGAGGCAGCTGGAGAAGCTTCTTCTGTTCGGCATGCTGGTCTGCCTGGAC
ACGTTTTTGTACGTGACAACTTTTCTGCCGATCAGGATTATTATCGGCGT
CGTGTCCGCCTTGTTCTCCCTCGTCACCAGGTGGGCCCCTGGCGGCTTCG
TACAGCTTTGGGTTAAAATAATTTACGAGCCTCTACGTGGAGGCGTTTTT
CTGTAA
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