mRNA_H-elongata_contig100805.72.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100805.72.1
Unique NamemRNA_H-elongata_contig100805.72.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: D7FYZ1_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.980e-34
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372
            +S +++TWSDGH+SSY   WLR H+NSP+AL +R   S   PL A D IP   +VD   YMEDD ALYK LR +NR GV +L N G +E TV+ +A+R+APVSH  +YG  F VV++
Sbjct:   40 DSRVSITWSDGHLSSYGTAWLREHDNSPSALHERSHGSRPAPLCAWDAIP---KVDAREYMEDDGALYKTLRKVNRVGVVLLENAGVEEGTVLDLARRVAPVSHHTLYGDMFDVVSQ 153          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A836C7R7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-21
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRE--------------RNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372
            +  M VTWSDGH S Y   WLR H++S +++  R+              + S+   LR+ + IP+V   D  A    ++ +Y++LR +N TG+C L  +GT+ +TV  +AQRI+P+SH M+YG+TF V+++
Sbjct:   87 KEGMRVTWSDGHESVYPSQWLRLHDSSVSSIIDRQVRQWRAGGARVSENQGSWPVALRSWEAIPKVAFADFTA---GEEGVYQLLRSVNNTGLCTLEGVGTEPDTVESIAQRISPLSHSMLYGRTFDVISQ 214          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A3N4ILY5_ASCIM (Clavaminate synthase-like protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4ILY5_ASCIM)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-9
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   22 ESAMNVTWS--DGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHV 363
            +  + +TW   D H+S Y V WL  +++    L  R  N   T    + +  +V   D  AYM++D+AL++VL+ + R G+  L  + T+ ++V  +A+RI P+ +   YG+T+ V
Sbjct:  128 KKGLRITWEGEDAHVSEYPVEWLIRYSSKRNRLHARFNNIRQTYWDKAMMEEQVRWFDYDAYMKEDEALFEVLKTLERYGLVFLRGVPTEVDSVATIAKRIGPLKNTF-YGETWDV 242          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A2R2MTQ5_LINUN (LOW QUALITY PROTEIN: gamma-butyrobetaine dioxygenase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MTQ5_LINUN)

HSP 1 Score: 63.9 bits (154), Expect = 2.520e-9
Identity = 38/125 (30.40%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    7 QVTTTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSF---ATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372
            QV  T   + VTW DGH+S+YQ++WL+ HN S  A R R  +++         +++   + R D    + D++ +Y+ L  I  TG+ +++N       VV +   IA +     YG TF V  +
Sbjct:  137 QVDPTTGDIEVTWDDGHVSTYQLDWLKKHNFSAEARRCRLSDTYLKGGKKFWGAELNGNIPRFDFKEVISDNEQMYRFLDTIRVTGIAVVHNAPQDTGVVVTLGNAIAFI-RPCNYGDTFQVYTR 260          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: UPI00156A21A1 (TauD/TfdA family dioxygenase n=1 Tax=Acetobacter conturbans TaxID=1737472 RepID=UPI00156A21A1)

HSP 1 Score: 62.4 bits (150), Expect = 8.490e-9
Identity = 34/116 (29.31%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   31 MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKVT 378
            +NVTW+DGH SSY   WLRAH     +  +R+  +    +  ++   ++   D    ME++  L   L  +  +G+ ++ N+ TK ++++G A RI+ +  +  +G+ F V +K T
Sbjct:  113 LNVTWNDGHKSSYPAGWLRAHATDDVSRAERQAKNPRPFIWGAEHANKLRTFDYEHVMENNNELLAWLIALRASGLTLMKNVPTKADSLLGPANRISHI-RETNFGRVFDVKSKPT 227          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: UPI001601CEC8 (gamma-butyrobetaine dioxygenase-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601CEC8)

HSP 1 Score: 58.5 bits (140), Expect = 1.650e-7
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   19 TESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERN-SFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIA 321
            TESA++VTW DGH S Y   WLR    S  A   RER       L  +D++  + + +  A + DD+ALY  +  ++  G+ ++ N+      V  +A R++
Sbjct:  168 TESALHVTWPDGHQSRYDWQWLRDRCFSSQARADRERRWKNMKQLWGADILANLPKFEFPALLTDDRALYDFMYTLDTVGLALVQNMSRDVGQVKKLANRVS 269          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A1B6E3F2_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E3F2_9HEMI)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-7
Identity = 36/120 (30.00%), Postives = 59/120 (49.17%), Query Frame = 1
Query:   22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFAT---PLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372
            ES + V WSD H+S + ++WL+ H  S    +    N +     P RA++    + R +    ++ +  L   L  +   GV ++ + G KE T++G+  R+A V H   YG  F V AK
Sbjct:   84 ESRLKVKWSDNHLSYFTISWLKNHRFSSKHQKYWLHNVYRPCPQPWRANEFSRILQRFNYNDVLKREDTLLSWLESLAIWGVALIKDAGVKENTLLGLCNRVAFVKHTQ-YGNIFGVKAK 202          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A101LNQ5_9PSED (Gamma-butyrobetaine dioxygenase n=1 Tax=Pseudomonas sp. EpS/L25 TaxID=1749078 RepID=A0A101LNQ5_9PSED)

HSP 1 Score: 58.2 bits (139), Expect = 2.510e-7
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1
Query:   31 MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKV 375
            + + W DGH S+Y   WLRAH     +L +RER      L  S +   V     A  M D+ AL   L D+  TG+ +L+ +      +  VAQRI+ +  +  +G  F V +KV
Sbjct:   84 LEIFWQDGHASTYDAGWLRAHAYDEASLAERERLKPRKKLWDSSLA--VPSFHYAEIMTDEAALLAWLLDVRDTGLSLLHGVPVATGALASVAQRISFI-RETNFGTLFDVQSKV 195          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A1G5MIA4_9PSED (Gamma-butyrobetaine dioxygenase n=17 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1G5MIA4_9PSED)

HSP 1 Score: 57.8 bits (138), Expect = 3.420e-7
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1
Query:   16 TTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDV-IPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKV 375
            T +  +++ W DGH S+Y   WLRAH     +L +RER      L  S + +P     D    M DD AL   L  +  TG+ +++ + T+   +V VA+RI+ +  +  +G  F V +KV
Sbjct:   79 TDDGNLDILWQDGHASTYDAGWLRAHAYDEESLAERERLKPKKRLWDSSLAVPAFHYTD---VMVDDTALLAWLLMVRDTGLSLIHGVPTESGALVPVAKRISFI-RESNFGTLFDVQSKV 195          
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A6J1SQ13_FRAOC (gamma-butyrobetaine dioxygenase-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SQ13_FRAOC)

HSP 1 Score: 57.4 bits (137), Expect = 4.840e-7
Identity = 32/125 (25.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    7 QVTTTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLR---ASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372
            +V  +   +++ W DGH+S + +NWL+ H+    A +   ++ +  P +   A      + R   +  ++ D++LY  L ++   GV I+ N   +  T+  +A+R+A +  +  YG+ F V AK
Sbjct:  120 EVKVSRDTVHIIWLDGHVSDFNINWLKEHSFQKEAQQMWLKSMYRLPRKTWTAQSFEDILTRFQFSDVLKSDESLYNWLVNLATFGVSIIENAPAESSTIRNLAERVAFI-RRTHYGEEFSVRAK 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FYZ1_ECTSI1.980e-3452.99TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C7R7_9STRA1.420e-2137.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3N4ILY5_ASCIM1.360e-931.03Clavaminate synthase-like protein n=1 Tax=Ascobolu... [more]
A0A2R2MTQ5_LINUN2.520e-930.40LOW QUALITY PROTEIN: gamma-butyrobetaine dioxygena... [more]
UPI00156A21A18.490e-929.31TauD/TfdA family dioxygenase n=1 Tax=Acetobacter c... [more]
UPI001601CEC81.650e-732.35gamma-butyrobetaine dioxygenase-like n=1 Tax=Branc... [more]
A0A1B6E3F2_9HEMI1.860e-730.00Uncharacterized protein n=1 Tax=Clastoptera arizon... [more]
A0A101LNQ5_9PSED2.510e-733.04Gamma-butyrobetaine dioxygenase n=1 Tax=Pseudomona... [more]
A0A1G5MIA4_9PSED3.420e-732.23Gamma-butyrobetaine dioxygenase n=17 Tax=Pseudomon... [more]
A0A6J1SQ13_FRAOC4.840e-725.60gamma-butyrobetaine dioxygenase-like n=1 Tax=Frank... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100805contigH-elongata_contig100805:962..2026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.4e-27
Seed eggNOG ortholog2880.D7FYZ1
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
EggNOG free text desc.trimethyllysine dioxygenase activity
EggNOG OGsCOG2175@1,KOG3889@2759
Ec32 ortholog descriptionTaurine catabolism dioxygenase TauD/TfdA
Ec32 orthologEc-06_002250.1
EC1.14.11.8
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100805.72.1prot_H-elongata_contig100805.72.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100805 992..2026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.1372013-UTR-H-elongata_contig100805:961..9911622929549.1372013-UTR-H-elongata_contig100805:961..991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100805 962..991 +
1691679064.993379-UTR-H-elongata_contig100805:961..9911691679064.993379-UTR-H-elongata_contig100805:961..991Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100805 962..991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.1515818-CDS-H-elongata_contig100805:991..11441622929549.1515818-CDS-H-elongata_contig100805:991..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100805 992..1144 +
1691679065.0152743-CDS-H-elongata_contig100805:991..11441691679065.0152743-CDS-H-elongata_contig100805:991..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100805 992..1144 +
1622929549.173302-CDS-H-elongata_contig100805:1822..20261622929549.173302-CDS-H-elongata_contig100805:1822..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100805 1823..2026 +
1691679065.0286722-CDS-H-elongata_contig100805:1822..20261691679065.0286722-CDS-H-elongata_contig100805:1822..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100805 1823..2026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100805.72.1

>prot_H-elongata_contig100805.72.1 ID=prot_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVI
RVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVS
HQMIYGKTFHVVAKVTKAG
back to top

mRNA from alignment at H-elongata_contig100805:962..2026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100805.72.1 ID=mRNA_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig100805:962..2026+ (Himanthalia elongata Himel1 dioecious)
ACGCCGCAGGTGACGACCACCGAGTCCGCGATGAACGTGACTTGGTCCGA CGGTCACATCAGCTCCTACCAAGTAAACTGGCTAAGGGCTCACAACAACT CGCCCACCGCTTTGCGTCAGCGCGAGCGCAACAGCTTCGCGACTCCTCTG CGCGCCTCTGACGTCATCCCCGAGGTGATACGGGTAAACGGGCGCATATT TTTTCTAATAATAGAGTCATTTTGGTTTATTAAGAATATTTCTAAGATTT TTACGACGGACGTAGCGAATGTTATTATAGTGCTACTGCTGTTGATCTGC ACCTATGTAACCGTGGCTGATTTGTTAGACCGAAGGCGTTTTTGTTCAAT CGCCGTAACCTTTTTTGTGGAGTGTTATTTGAATGACATTCATTCCTGTA TGCTCTGGTTTGCACCCCCCCCCCAAGAGATAGACTTGTGAATGCTTCAA CGAAAGAACAGAGGTCCGGAGGAAGAAGGTATGACTAATCTAGCCCTGAG CAAGGAGAACGAGATACAAATAACACATGATGGGAACAGAGCCCATGAAT ACCCTGGTGGTATTGATTCTGTATCAGCCAATCGCGTAAGGGGATGAATC GATCCATCCCCGGAAGGGGCTTTTTTATACCACCCCTCCTTGAACCCTGG GGTAGACTCGCCACATCTCTCACCCTTCCTCTATCGTTCAATTCCCTCCT CAGGCGAACGGACGGGTGTGATCAAGACAAATCCACATATCGGACAAAAT TACTCTTCATTCTCTCTCTTTGTCTGTCATAGTCTCTCTATATCTCTCTC TTTCTCCATCTCGCTCTCTTGGTTTCGCCGCTTCCCGTACCCCTGCGACG CGCGCACATAGGTCGACGGCGCGGCGTATATGGAAGACGACCAAGCGTTG TACAAAGTGCTCCGGGATATTAATCGCACAGGGGTGTGCATACTCAACAA CCTAGGCACGAAGGAAGAGACGGTGGTGGGCGTGGCGCAACGCATCGCCC CCGTCTCCCACCAGATGATCTACGGGAAGACCTTCCACGTGGTCGCGAAG GTGACGAAAGCGGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100805:962..2026+

>mRNA_H-elongata_contig100805.72.1 ID=mRNA_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig100805:962..2026+ (Himanthalia elongata Himel1 dioecious)
ATGAACGTGACTTGGTCCGACGGTCACATCAGCTCCTACCAAGTAAACTG
GCTAAGGGCTCACAACAACTCGCCCACCGCTTTGCGTCAGCGCGAGCGCA
ACAGCTTCGCGACTCCTCTGCGCGCCTCTGACGTCATCCCCGAGGTGATA
CGGATGAACGTGACTTGGTCCGACGGTCACATCAGCTCCTACCAAGTAAA
CTGGCTAAGGGCTCACAACAACTCGCCCACCGCTTTGCGTCAGCGCGAGC
GCAACAGCTTCGCGACTCCTCTGCGCGCCTCTGACGTCATCCCCGAGGTG
ATACGGGTCGACGGCGCGGCGTATATGGAAGACGACCAAGCGTTGTACAA
AGTGCTCCGGGATATTAATCGCACAGGGGTGTGCATACTCAACAACCTAG
GCACGAAGGAAGAGACGGTGGTGGGCGTGGCGCAACGCATCGCCCCCGTC
TCCCACCAGATGATCTACGGGAAGACCTTCCACGTGGTCGCGAAGGTGAC
GAAAGCGGGCGTCGACGGCGCGGCGTATATGGAAGACGACCAAGCGTTGT
ACAAAGTGCTCCGGGATATTAATCGCACAGGGGTGTGCATACTCAACAAC
CTAGGCACGAAGGAAGAGACGGTGGTGGGCGTGGCGCAACGCATCGCCCC
CGTCTCCCACCAGATGATCTACGGGAAGACCTTCCACGTGGTCGCGAAGG
TGACGAAAGCGGGC
back to top