mRNA_H-elongata_contig100805.72.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: D7FYZ1_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ1_ECTSI) HSP 1 Score: 128 bits (322), Expect = 1.980e-34 Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372 +S +++TWSDGH+SSY WLR H+NSP+AL +R S PL A D IP +VD YMEDD ALYK LR +NR GV +L N G +E TV+ +A+R+APVSH +YG F VV++ Sbjct: 40 DSRVSITWSDGHLSSYGTAWLREHDNSPSALHERSHGSRPAPLCAWDAIP---KVDAREYMEDDGALYKTLRKVNRVGVVLLENAGVEEGTVLDLARRVAPVSHHTLYGDMFDVVSQ 153
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A836C7R7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R7_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.420e-21 Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 1 Query: 22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRE--------------RNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372 + M VTWSDGH S Y WLR H++S +++ R+ + S+ LR+ + IP+V D A ++ +Y++LR +N TG+C L +GT+ +TV +AQRI+P+SH M+YG+TF V+++ Sbjct: 87 KEGMRVTWSDGHESVYPSQWLRLHDSSVSSIIDRQVRQWRAGGARVSENQGSWPVALRSWEAIPKVAFADFTA---GEEGVYQLLRSVNNTGLCTLEGVGTEPDTVESIAQRISPLSHSMLYGRTFDVISQ 214
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A3N4ILY5_ASCIM (Clavaminate synthase-like protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4ILY5_ASCIM) HSP 1 Score: 64.7 bits (156), Expect = 1.360e-9 Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 22 ESAMNVTWS--DGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHV 363 + + +TW D H+S Y V WL +++ L R N T + + +V D AYM++D+AL++VL+ + R G+ L + T+ ++V +A+RI P+ + YG+T+ V Sbjct: 128 KKGLRITWEGEDAHVSEYPVEWLIRYSSKRNRLHARFNNIRQTYWDKAMMEEQVRWFDYDAYMKEDEALFEVLKTLERYGLVFLRGVPTEVDSVATIAKRIGPLKNTF-YGETWDV 242
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A2R2MTQ5_LINUN (LOW QUALITY PROTEIN: gamma-butyrobetaine dioxygenase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MTQ5_LINUN) HSP 1 Score: 63.9 bits (154), Expect = 2.520e-9 Identity = 38/125 (30.40%), Postives = 63/125 (50.40%), Query Frame = 1 Query: 7 QVTTTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSF---ATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372 QV T + VTW DGH+S+YQ++WL+ HN S A R R +++ +++ + R D + D++ +Y+ L I TG+ +++N VV + IA + YG TF V + Sbjct: 137 QVDPTTGDIEVTWDDGHVSTYQLDWLKKHNFSAEARRCRLSDTYLKGGKKFWGAELNGNIPRFDFKEVISDNEQMYRFLDTIRVTGIAVVHNAPQDTGVVVTLGNAIAFI-RPCNYGDTFQVYTR 260
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: UPI00156A21A1 (TauD/TfdA family dioxygenase n=1 Tax=Acetobacter conturbans TaxID=1737472 RepID=UPI00156A21A1) HSP 1 Score: 62.4 bits (150), Expect = 8.490e-9 Identity = 34/116 (29.31%), Postives = 63/116 (54.31%), Query Frame = 1 Query: 31 MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKVT 378 +NVTW+DGH SSY WLRAH + +R+ + + ++ ++ D ME++ L L + +G+ ++ N+ TK ++++G A RI+ + + +G+ F V +K T Sbjct: 113 LNVTWNDGHKSSYPAGWLRAHATDDVSRAERQAKNPRPFIWGAEHANKLRTFDYEHVMENNNELLAWLIALRASGLTLMKNVPTKADSLLGPANRISHI-RETNFGRVFDVKSKPT 227
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: UPI001601CEC8 (gamma-butyrobetaine dioxygenase-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601CEC8) HSP 1 Score: 58.5 bits (140), Expect = 1.650e-7 Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 19 TESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERN-SFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIA 321 TESA++VTW DGH S Y WLR S A RER L +D++ + + + A + DD+ALY + ++ G+ ++ N+ V +A R++ Sbjct: 168 TESALHVTWPDGHQSRYDWQWLRDRCFSSQARADRERRWKNMKQLWGADILANLPKFEFPALLTDDRALYDFMYTLDTVGLALVQNMSRDVGQVKKLANRVS 269
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A1B6E3F2_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E3F2_9HEMI) HSP 1 Score: 58.5 bits (140), Expect = 1.860e-7 Identity = 36/120 (30.00%), Postives = 59/120 (49.17%), Query Frame = 1 Query: 22 ESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFAT---PLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372 ES + V WSD H+S + ++WL+ H S + N + P RA++ + R + ++ + L L + GV ++ + G KE T++G+ R+A V H YG F V AK Sbjct: 84 ESRLKVKWSDNHLSYFTISWLKNHRFSSKHQKYWLHNVYRPCPQPWRANEFSRILQRFNYNDVLKREDTLLSWLESLAIWGVALIKDAGVKENTLLGLCNRVAFVKHTQ-YGNIFGVKAK 202
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A101LNQ5_9PSED (Gamma-butyrobetaine dioxygenase n=1 Tax=Pseudomonas sp. EpS/L25 TaxID=1749078 RepID=A0A101LNQ5_9PSED) HSP 1 Score: 58.2 bits (139), Expect = 2.510e-7 Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1 Query: 31 MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKV 375 + + W DGH S+Y WLRAH +L +RER L S + V A M D+ AL L D+ TG+ +L+ + + VAQRI+ + + +G F V +KV Sbjct: 84 LEIFWQDGHASTYDAGWLRAHAYDEASLAERERLKPRKKLWDSSLA--VPSFHYAEIMTDEAALLAWLLDVRDTGLSLLHGVPVATGALASVAQRISFI-RETNFGTLFDVQSKV 195
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A1G5MIA4_9PSED (Gamma-butyrobetaine dioxygenase n=17 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1G5MIA4_9PSED) HSP 1 Score: 57.8 bits (138), Expect = 3.420e-7 Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1 Query: 16 TTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDV-IPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAKV 375 T + +++ W DGH S+Y WLRAH +L +RER L S + +P D M DD AL L + TG+ +++ + T+ +V VA+RI+ + + +G F V +KV Sbjct: 79 TDDGNLDILWQDGHASTYDAGWLRAHAYDEESLAERERLKPKKRLWDSSLAVPAFHYTD---VMVDDTALLAWLLMVRDTGLSLIHGVPTESGALVPVAKRISFI-RESNFGTLFDVQSKV 195
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Match: A0A6J1SQ13_FRAOC (gamma-butyrobetaine dioxygenase-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SQ13_FRAOC) HSP 1 Score: 57.4 bits (137), Expect = 4.840e-7 Identity = 32/125 (25.60%), Postives = 64/125 (51.20%), Query Frame = 1 Query: 7 QVTTTESAMNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLR---ASDVIPEVIRVDGAAYMEDDQALYKVLRDINRTGVCILNNLGTKEETVVGVAQRIAPVSHQMIYGKTFHVVAK 372 +V + +++ W DGH+S + +NWL+ H+ A + ++ + P + A + R + ++ D++LY L ++ GV I+ N + T+ +A+R+A + + YG+ F V AK Sbjct: 120 EVKVSRDTVHIIWLDGHVSDFNINWLKEHSFQKEAQQMWLKSMYRLPRKTWTAQSFEDILTRFQFSDVLKSDESLYNWLVNLATFGVSIIENAPAESSTIRNLAERVAFI-RRTHYGEEFSVRAK 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100805.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100805.72.1 >prot_H-elongata_contig100805.72.1 ID=prot_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MNVTWSDGHISSYQVNWLRAHNNSPTALRQRERNSFATPLRASDVIPEVIback to top mRNA from alignment at H-elongata_contig100805:962..2026+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100805.72.1 ID=mRNA_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig100805:962..2026+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100805:962..2026+ >mRNA_H-elongata_contig100805.72.1 ID=mRNA_H-elongata_contig100805.72.1|Name=mRNA_H-elongata_contig100805.72.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig100805:962..2026+ (Himanthalia elongata Himel1 dioecious)back to top |