mRNA_H-elongata_contig100778.71.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100778.71.1
Unique NamemRNA_H-elongata_contig100778.71.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 121 bits (303), Expect = 8.030e-29
Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    7 TKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEPG 471
            T ++ ++    L S F +K+LGEV + LG  I  D+ A TL   Q +YI  V  RF      ++V     G  L+K  SP T AE E+MR  PYR ++G L +  T TRPD+++   QL +F +N G  HW AA + L+YL  T++ GI Y G  G
Sbjct: 1041 TNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNG 1196          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.050e-28
Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = 1
Query:    4 ATKRDEE--QAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEPG 471
            A K  EE  +    L S F +K+LGE  + LG  I  D+  GTL   Q +Y+  V  RF      ++V     G  LSK+ SP T AE E+MR  PY+ ++G+L +  T TRPD+++   QL +F +N G  HW AA + L+YL  T+D GI Y G  G
Sbjct:  112 AAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNG 270          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 119 bits (299), Expect = 1.990e-28
Identity = 67/151 (44.37%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   22 EQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVT--KTSIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEP 468
            ++ V  L   F ++DLG  SY LG  I R++    L   Q QYI    E FG+T  K +  P       LSKS SPQT  EVEEM +IPY   VG+L + ATMTRPDI++ A  L +FN N G  HW A +  L+YL  T D+ + YG +P
Sbjct:  298 DEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYGPDP 447          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 117 bits (292), Expect = 2.410e-27
Identity = 62/139 (44.60%), Postives = 81/139 (58.27%), Query Frame = 1
Query:   52 FPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465
            + I DLG VS+ LG  I  D  AGTL   QH YI+ +  RF  T    V       + LSK+  P++ AEV  MR++PYRE +GAL +AA  TRPDI+FA   L +F  N G  HW A ++  +YL  TR L + YGG+
Sbjct: 1019 YKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQ 1157          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 114 bits (286), Expect = 4.370e-27
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   34 RDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGGKA-LSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGG 462
            R L + + + DLG VS+ LG  + RD +A TL   QH YI+ +  RF       + +     + LSKS  P++ A+V  MR++PY+E +G+L +AA  TRPDI+FA   L +F+ N G  HW A ++  +YL  T+ L + YGG
Sbjct:  141 RQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGG 284          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A182GR78_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR78_AEDAL)

HSP 1 Score: 112 bits (279), Expect = 1.000e-26
Identity = 56/140 (40.00%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   52 FPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEP 468
            F +KDLG  ++ LG  I R++  G L  DQ  YI+ +  RFG+    SI   A  G  L KS +P+T  E  EMR +PY+E VG L++ A  TRPDI+FA + + +F+ N G  HW A ++ ++YL  T    + Y   P
Sbjct:   38 FKMKDLGPATHCLGIRIKRNRREGKLSLDQQAYIEEIVRRFGMENAYSIATPADSGVRLEKSMAPKTEEEEMEMRNVPYKEAVGCLSFVAQTTRPDIAFAVNAVSQFSSNPGKPHWEAVKRIIRYLKGTATKKLEYSRNP 177          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI)

HSP 1 Score: 115 bits (287), Expect = 1.120e-26
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   16 DEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465
            DE +A   + + + + DLG VS+ LG  I RD  AGTL   QH YI  +  RF  T    V +     + LSK+  P++ AEV  MR++PYRE + AL +AA  TRPDI+FA   L +F    G  HW A ++  +YL  TR L + YGG+
Sbjct:  871 DENKAK--IGALYKLTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAISALMYAALGTRPDIAFAVSTLAQFAQKPGQPHWDAVKRVFRYLLGTRMLSLVYGGQ 1019          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI)

HSP 1 Score: 110 bits (276), Expect = 1.390e-26
Identity = 59/137 (43.07%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   58 IKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465
            + DLG VS+ LG  I RD  AGT    QH YI  +  RF  T    + +     + LSK+  P++ AEV  MR++PYRE +G L +AA  T+PDI FA   L +F  N G  HW A ++  +YL  TR L   YGGE
Sbjct:    1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQFAQNPGQPHWDAVKRVFRYLLGTRTLSRVYGGE 137          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A284S2Y9_ARMOS (Uncharacterized protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S2Y9_ARMOS)

HSP 1 Score: 114 bits (286), Expect = 1.560e-26
Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 1
Query:    1 SATKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVT--KTSIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYG 459
            S T  DE Q   ++   F I  LG +++ LG  + RD+   TL   Q  YI ++  +FG+T  K+  VP     + +S+   P T ++V +MR +PYRE++G L W +T TRPD++F    L +F DN G  HW+AA++ LQYL  TR LG+ YG
Sbjct: 1120 SPTLIDEIQ--EEIARIFKITMLGPLNWLLGMEVKRDRKNHTLSISQTTYIDSLLRKFGMTDCKSVSVPLDPMTQ-ISREQCPNTPSDVADMRDVPYRELIGGLIWLSTATRPDLAFTVCVLSRFLDNPGRPHWNAAKRVLQYLKGTRTLGLTYG 1271          
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A4Y9ZWQ0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZWQ0_9AGAM)

HSP 1 Score: 108 bits (269), Expect = 3.620e-26
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   58 IKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGGKA-LSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGI 450
            + DLG++ + LG  I RD+ A T+   QH YI ++  RF +     V +       LS + SP T AE  +MR + YRE VGAL +A+  TRPDIS+A   L +F  N+GP HW A ++  +YL  TRDL +
Sbjct:   94 VTDLGDLHWILGIEIKRDREARTIHLSQHSYIDSILRRFNLEDAKPVSTPMETHLRLSTAQSPSTTAEYAQMRDVLYREAVGALMYASLATRPDISYAVLVLSRFATNAGPAHWEAVKRVFRYLKGTRDLWL 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H572_PHYRM8.030e-2939.74Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A6A3J8V8_9STRA1.050e-2840.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE1.990e-2844.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SPD4_PYCCI2.410e-2744.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2VSW8_TRAPU4.370e-2739.58Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GR78_AEDAL1.000e-2640.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SV79_PYCCI1.120e-2641.72Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A060S8R4_PYCCI1.390e-2643.07Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A284S2Y9_ARMOS1.560e-2640.00Uncharacterized protein n=2 Tax=Armillaria ostoyae... [more]
A0A4Y9ZWQ0_9AGAM3.620e-2641.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100778contigH-elongata_contig100778:1760..2245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog164328.Phyra85923
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.0983357-CDS-H-elongata_contig100778:1759..22451622929549.0983357-CDS-H-elongata_contig100778:1759..2245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100778 1760..2245 +
1691679064.9814923-CDS-H-elongata_contig100778:1759..22451691679064.9814923-CDS-H-elongata_contig100778:1759..2245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100778 1760..2245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100778.71.1prot_H-elongata_contig100778.71.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100778 1760..2245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100778.71.1

>prot_H-elongata_contig100778.71.1 ID=prot_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
SATKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQY
IQTVAERFGVTKTSIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVG
ALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGI
PYGGEPGGPSY*
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mRNA from alignment at H-elongata_contig100778:1760..2245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100778.71.1 ID=mRNA_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig100778:1760..2245+ (Himanthalia elongata Himel1 dioecious)
AGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTG TTTCCCCATCAAGGATCTGGGGGAAGTTTCATATGACCTGGGATGCCACA TCATGCGGGATCAGAACGCCGGGACACTGAAGTTCGACCAGCATCAGTAC ATACAGACCGTAGCGGAACGTTTTGGCGTGACGAAGACCAGCATCGTCCC GTCTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGG GCGCAGAAGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGG GCTCTAACGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGC GCACCAACTGGAAAAATTCAACGATAACTCGGGACCGACACACTGGAGTG CAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCGGGACCTCGGGATC CCCTATGGAGGGGAACCGGGGGGACCAAGTTATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig100778:1760..2245+

>mRNA_H-elongata_contig100778.71.1 ID=mRNA_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig100778:1760..2245+ (Himanthalia elongata Himel1 dioecious)
AGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTG
TTTCCCCATCAAGGATCTGGGGGAAGTTTCATATGACCTGGGATGCCACA
TCATGCGGGATCAGAACGCCGGGACACTGAAGTTCGACCAGCATCAGTAC
ATACAGACCGTAGCGGAACGTTTTGGCGTGACGAAGACCAGCATCGTCCC
GTCTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGG
GCGCAGAAGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGG
GCTCTAACGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGC
GCACCAACTGGAAAAATTCAACGATAACTCGGGACCGACACACTGGAGTG
CAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCGGGACCTCGGGATC
CCCTATGGAGGGGAACCGGGGGGACCAAGTTATTAGAGTGCGACGAAACG
TGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGG
ATCTGGGGGAAGTTTCATATGACCTGGGATGCCACATCATGCGGGATCAG
AACGCCGGGACACTGAAGTTCGACCAGCATCAGTACATACAGACCGTAGC
GGAACGTTTTGGCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAG
GAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGGCGCAGAAGTTGAA
GAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAACGTGGGC
AGCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGAAA
AATTCAACGATAACTCGGGACCGACACACTGGAGTGCAGCCCAGAAAGCG
CTGCAATATTTATGGCGCACTCGGGACCTCGGGATCCCCTATGGAGGGGA
ACCGGGGGGACCAAGTTATTAG
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