mRNA_H-elongata_contig100778.71.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM) HSP 1 Score: 121 bits (303), Expect = 8.030e-29 Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 7 TKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEPG 471 T ++ ++ L S F +K+LGEV + LG I D+ A TL Q +YI V RF ++V G L+K SP T AE E+MR PYR ++G L + T TRPD+++ QL +F +N G HW AA + L+YL T++ GI Y G G Sbjct: 1041 TNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNG 1196
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.050e-28 Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = 1 Query: 4 ATKRDEE--QAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEPG 471 A K EE + L S F +K+LGE + LG I D+ GTL Q +Y+ V RF ++V G LSK+ SP T AE E+MR PY+ ++G+L + T TRPD+++ QL +F +N G HW AA + L+YL T+D GI Y G G Sbjct: 112 AAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNG 270
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 119 bits (299), Expect = 1.990e-28 Identity = 67/151 (44.37%), Postives = 86/151 (56.95%), Query Frame = 1 Query: 22 EQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVT--KTSIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEP 468 ++ V L F ++DLG SY LG I R++ L Q QYI E FG+T K + P LSKS SPQT EVEEM +IPY VG+L + ATMTRPDI++ A L +FN N G HW A + L+YL T D+ + YG +P Sbjct: 298 DEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYGPDP 447
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI) HSP 1 Score: 117 bits (292), Expect = 2.410e-27 Identity = 62/139 (44.60%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 52 FPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465 + I DLG VS+ LG I D AGTL QH YI+ + RF T V + LSK+ P++ AEV MR++PYRE +GAL +AA TRPDI+FA L +F N G HW A ++ +YL TR L + YGG+ Sbjct: 1019 YKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQ 1157
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU) HSP 1 Score: 114 bits (286), Expect = 4.370e-27 Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1 Query: 34 RDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGGKA-LSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGG 462 R L + + + DLG VS+ LG + RD +A TL QH YI+ + RF + + + LSKS P++ A+V MR++PY+E +G+L +AA TRPDI+FA L +F+ N G HW A ++ +YL T+ L + YGG Sbjct: 141 RQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGG 284
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A182GR78_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR78_AEDAL) HSP 1 Score: 112 bits (279), Expect = 1.000e-26 Identity = 56/140 (40.00%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 52 FPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKT-SIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGEP 468 F +KDLG ++ LG I R++ G L DQ YI+ + RFG+ SI A G L KS +P+T E EMR +PY+E VG L++ A TRPDI+FA + + +F+ N G HW A ++ ++YL T + Y P Sbjct: 38 FKMKDLGPATHCLGIRIKRNRREGKLSLDQQAYIEEIVRRFGMENAYSIATPADSGVRLEKSMAPKTEEEEMEMRNVPYKEAVGCLSFVAQTTRPDIAFAVNAVSQFSSNPGKPHWEAVKRIIRYLKGTATKKLEYSRNP 177
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060SV79_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SV79_PYCCI) HSP 1 Score: 115 bits (287), Expect = 1.120e-26 Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 1 Query: 16 DEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465 DE +A + + + + DLG VS+ LG I RD AGTL QH YI + RF T V + + LSK+ P++ AEV MR++PYRE + AL +AA TRPDI+FA L +F G HW A ++ +YL TR L + YGG+ Sbjct: 871 DENKAK--IGALYKLTDLGPVSWLLGIKISRDLTAGTLSLSQHAYIDALLARFNFTDLKPVSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAISALMYAALGTRPDIAFAVSTLAQFAQKPGQPHWDAVKRVFRYLLGTRMLSLVYGGQ 1019
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A060S8R4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S8R4_PYCCI) HSP 1 Score: 110 bits (276), Expect = 1.390e-26 Identity = 59/137 (43.07%), Postives = 77/137 (56.20%), Query Frame = 1 Query: 58 IKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGG-KALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYGGE 465 + DLG VS+ LG I RD AGT QH YI + RF T + + + LSK+ P++ AEV MR++PYRE +G L +AA T+PDI FA L +F N G HW A ++ +YL TR L YGGE Sbjct: 1 MTDLGPVSWLLGIKISRDLEAGTFSLSQHAYIDALLARFNFTDLKPMSTPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGVLMYAALGTQPDIVFAVSTLAQFAQNPGQPHWDAVKRVFRYLLGTRTLSRVYGGE 137
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A284S2Y9_ARMOS (Uncharacterized protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S2Y9_ARMOS) HSP 1 Score: 114 bits (286), Expect = 1.560e-26 Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 1 SATKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVT--KTSIVPSAAGGKALSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGIPYG 459 S T DE Q ++ F I LG +++ LG + RD+ TL Q YI ++ +FG+T K+ VP + +S+ P T ++V +MR +PYRE++G L W +T TRPD++F L +F DN G HW+AA++ LQYL TR LG+ YG Sbjct: 1120 SPTLIDEIQ--EEIARIFKITMLGPLNWLLGMEVKRDRKNHTLSISQTTYIDSLLRKFGMTDCKSVSVPLDPMTQ-ISREQCPNTPSDVADMRDVPYRELIGGLIWLSTATRPDLAFTVCVLSRFLDNPGRPHWNAAKRVLQYLKGTRTLGLTYG 1271
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Match: A0A4Y9ZWQ0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZWQ0_9AGAM) HSP 1 Score: 108 bits (269), Expect = 3.620e-26 Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 58 IKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYIQTVAERFGVTKTSIVPSAAGGKA-LSKSDSPQTGAEVEEMRQIPYREIVGALTWAATMTRPDISFAAHQLEKFNDNSGPTHWSAAQKALQYLWRTRDLGI 450 + DLG++ + LG I RD+ A T+ QH YI ++ RF + V + LS + SP T AE +MR + YRE VGAL +A+ TRPDIS+A L +F N+GP HW A ++ +YL TRDL + Sbjct: 94 VTDLGDLHWILGIEIKRDREARTIHLSQHSYIDSILRRFNLEDAKPVSTPMETHLRLSTAQSPSTTAEYAQMRDVLYREAVGALMYASLATRPDISYAVLVLSRFATNAGPAHWEAVKRVFRYLKGTRDLWL 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100778.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100778.71.1 >prot_H-elongata_contig100778.71.1 ID=prot_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp SATKRDEEQAVRDLCSCFPIKDLGEVSYDLGCHIMRDQNAGTLKFDQHQYback to top mRNA from alignment at H-elongata_contig100778:1760..2245+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100778.71.1 ID=mRNA_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig100778:1760..2245+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100778:1760..2245+ >mRNA_H-elongata_contig100778.71.1 ID=mRNA_H-elongata_contig100778.71.1|Name=mRNA_H-elongata_contig100778.71.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig100778:1760..2245+ (Himanthalia elongata Himel1 dioecious)back to top |