mRNA_H-elongata_contig100751.70.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100751.70.1
Unique NamemRNA_H-elongata_contig100751.70.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A6H5KWW6_9PHAE (Dynamin-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWW6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.120e-34
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 DELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRVS 306
            DELPY GLGKFGA FL KFQA ++PSP+L+H+NFV+TP IL A   E  G  +GYP+ EVV+WFADRSDLI LVFD+ KLD+ EEFREVV A IA +GDR S
Sbjct:  337 DELPYTGLGKFGASFLGKFQASIVPSPILEHINFVDTPGILAA---EKHGTPRGYPYPEVVKWFADRSDLIFLVFDSHKLDMGEEFREVVRA-IAEHGDRAS 434          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A835Z9Q7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.660e-25
Identity = 50/96 (52.08%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 DELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAH 288
            DELP+ GL +FGA FL  F+A +  + +L+H+ FV+TP +L +     QG  +GY F   V+WFADRSD+ILLVFD  KLD+SEEFR+++ A+ AH
Sbjct:  119 DELPFTGLSRFGAAFLNHFEASICDAEILEHITFVDTPGVLVSGK---QGDQRGYSFAHAVKWFADRSDMILLVFDVHKLDISEEFRQLIGALGAH 211          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A7S2KM23_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KM23_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.670e-24
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRV 303
            ELP+AGLG+FG  FL KF+A V PSPLL  V  ++TP +L   + E Q   + Y F EV  WFADRSDLILL+FDA KLD+S+E +E++  +  +  D+V
Sbjct:  152 ELPFAGLGEFGTAFLNKFEASVTPSPLLKRVTLIDTPGVL---SGEKQRLARAYDFSEVARWFADRSDLILLLFDAHKLDISDELKEIIEKIRPYNDDKV 248          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A7S1WWF8_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WWF8_ALECA)

HSP 1 Score: 99.4 bits (246), Expect = 3.650e-23
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAA 276
            ELPY+GL KFG+ FL KFQ LV  + +L+HV FV+TP +L   + + Q   +GY F++V +W A R DL+LL+FDA KLD+S+EF+EV+ A
Sbjct:  106 ELPYSGLSKFGSTFLSKFQVLVENAEILNHVTFVDTPGVL---SGDKQRTSRGYDFVKVCQWLASRCDLVLLLFDAHKLDISDEFKEVIQA 193          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: F0WLM2_9STRA (Uncharacterized protein AlNc14C147G7411 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLM2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.520e-22
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAH 288
            +LPY GL  FG  FL KF+A  LPS +L++++ ++TP IL   + E Q   +GY F++V  WFA+RSDLILL+FDA KLD+S+EF+ V+  +  H
Sbjct:  129 DLPYGGLSMFGTAFLNKFEAAQLPSKVLENISVIDTPGIL---SGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIEVLKGH 220          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A3F2RDZ0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDZ0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.860e-22
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRV 303
            +LPY GL  FG  FL KF+A  LP+PLL+ +  V+TP IL   + E Q   +GY F +V  WFA+RSDLILL+FDA KLD+S+EF+ V+  +  H  D+V
Sbjct:  132 DLPYGGLSMFGTAFLNKFEAAQLPAPLLEQLTIVDTPGIL---SGEKQRIARGYDFTQVARWFAERSDLILLLFDAHKLDISDEFQRVIEVLQGH-NDKV 227          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A813I9D6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I9D6_POLGL)

HSP 1 Score: 94.7 bits (234), Expect = 5.860e-22
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRV 303
            +LPY GL +FG  FL  FQALVLP+ +L  + F++TP +L       Q  G+ Y F  +  W ADR+DL+LL FDA KLD+S+EF+EV+  V+  Y D+V
Sbjct:  114 QLPYQGLSRFGGSFLGSFQALVLPAKILRDITFIDTPGVLSGSK---QRIGRDYEFAAISAWMADRADLVLLTFDAHKLDISDEFQEVME-VLRPYADKV 209          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: F4PZF1_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PZF1_CAVFA)

HSP 1 Score: 98.6 bits (244), Expect = 7.060e-22
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 DELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRVSQV 312
            + LPY GL KFG+ F+ KFQA + P+PLL+ ++F++TP +L   + E Q  G+ Y F  +V W+A+RSD+ILL+FDA KLD+S+EF+  + + +  Y D++  V
Sbjct:  116 ESLPYRGLEKFGSGFMSKFQASLCPAPLLEKISFIDTPGVL---SGEKQRIGRAYDFPSLVSWYAERSDMILLLFDAHKLDISDEFKSAIES-LKGYDDKIKIV 215          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A225WNS3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNS3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.410e-22
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDRV 303
            +LPY GL  FG  FL KF+A  LP+P+LD +  V+TP IL   + E Q   +GY F +V  WFA+RSDLILL+FDA KLD+S+EF+ V+  V+    D+V
Sbjct:  134 DLPYGGLSMFGTAFLNKFEAAQLPAPVLDELTIVDTPGIL---SGEKQRIARGYDFTQVARWFAERSDLILLLFDAHKLDISDEFQRVIE-VLQGQSDKV 229          
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Match: A0A6A4ZSB0_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZSB0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.600e-21
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    4 ELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQGAGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAH 288
            +LPY GL  FG  FL KF+A  LP   L+H+  ++TP IL   + E Q   +GY F++V +WFA+R+D++LL+FDA KLD+S+EF+ V+  +  H
Sbjct:  113 DLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGIL---SGEKQRISRGYDFVQVAKWFAERADMVLLLFDAHKLDISDEFQRVIEVLKGH 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100751.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWW6_9PHAE1.120e-3467.65Dynamin-type G domain-containing protein n=2 Tax=E... [more]
A0A835Z9Q7_9STRA6.660e-2552.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2KM23_9STRA2.670e-2452.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1WWF8_ALECA3.650e-2352.75Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
F0WLM2_9STRA1.520e-2249.47Uncharacterized protein AlNc14C147G7411 n=1 Tax=Al... [more]
A0A3F2RDZ0_9STRA2.860e-2251.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A813I9D6_POLGL5.860e-2248.00Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
F4PZF1_CAVFA7.060e-2245.19Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A225WNS3_9STRA7.410e-2251.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A4ZSB0_9STRA1.600e-2146.32Dynamin-type G domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100751contigH-elongata_contig100751:221..1947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.6e-30
Seed eggNOG ortholog2880.D7FUQ8
KEGG koko:K12483
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100751.70.1prot_H-elongata_contig100751.70.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100751 221..1947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.0137136-CDS-H-elongata_contig100751:220..2801622929549.0137136-CDS-H-elongata_contig100751:220..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 221..280 +
1691679064.948619-CDS-H-elongata_contig100751:220..2801691679064.948619-CDS-H-elongata_contig100751:220..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 221..280 +
1622929549.0297003-CDS-H-elongata_contig100751:1256..13731622929549.0297003-CDS-H-elongata_contig100751:1256..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 1257..1373 +
1691679064.9658885-CDS-H-elongata_contig100751:1256..13731691679064.9658885-CDS-H-elongata_contig100751:1256..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 1257..1373 +
1622929549.0483274-CDS-H-elongata_contig100751:1812..19471622929549.0483274-CDS-H-elongata_contig100751:1812..1947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 1813..1947 +
1691679064.9734142-CDS-H-elongata_contig100751:1812..19471691679064.9734142-CDS-H-elongata_contig100751:1812..1947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100751 1813..1947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100751.70.1

>prot_H-elongata_contig100751.70.1 ID=prot_H-elongata_contig100751.70.1|Name=mRNA_H-elongata_contig100751.70.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DELPYAGLGKFGAPFLRKFQALVLPSPLLDHVNFVETPSILPARTEEGQG
AGQGYPFLEVVEWFADRSDLILLVFDALKLDVSEEFREVVAAVIAHYGDR
VSQV
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mRNA from alignment at H-elongata_contig100751:221..1947+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100751.70.1 ID=mRNA_H-elongata_contig100751.70.1|Name=mRNA_H-elongata_contig100751.70.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1727bp|location=Sequence derived from alignment at H-elongata_contig100751:221..1947+ (Himanthalia elongata Himel1 dioecious)
GACGAGCTGCCGTACGCCGGGCTCGGAAAGTTCGGCGCGCCGTTTCTCAG AAAGTTCCAGGTGCCGTACGTCGTCCCTTCTCTCTCTCCGAGGGATTAGT GATGTGTTGTTTATCTGTCGGAACTGTCAGCGAGATGCATTCGCGGTTTA ATGCTCGAGGATATTTGCCGGCCCTTCTTCCCTCGATGGCAATAAGCTTC CCGATCAGAAATTTCTTGGGAAATTTCGTGGCAGGGGAGGGAGAGGTTTC TCAGTCGCGCCCTGTTTGTCTATTCGTGTTAGAATATAGCTACAATCCGA AATCAATGGAGATCAATGCAACCATTTGCTGAACTTACCTATACTCTCGA AAAACTATACAGTACTACTTAAATATATTCCTAGTAGAACCTTCTATGTT AACTGATGAATGTGTCCCACAGCTGATAGTGTCACTTATTCCCTTTCTCT CTCTCCTTCACCCCATCATCATCATCATCATTATTTTGTTATTAGTATAC AATCCACTCTCTAGGCTATAGTATAGTGCTGTGGTTTGTCATAGTCCCCA CATGAAGAATAATGTAAAGAGTACGGGATAATAATGGGATGGATCCCTGA TATTATTCCGTTGACCCGATGAACTCACTATTATTATTGGGGAACACGAT TAATCACGTGGTATGACGATTTTGTGCTCAAAGGTAGTGTAATGTACAAA TTCGAACTCGAACCCGACGGTAGTTGGTCACCTGGACTGCACCTCTCACG GTGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAAGGTTTT ATATATCGAGGCAACGTCCTACTTATAGTGCAATTTTTAAGCAGGAGGTT TGGTCGTCGAAGCCCTTGGCTAATATTTCACATGCGTTGGATCTGAATCC GAGCAAATAGTCAGGTGTTCAATGCGATACGGTTTTCGATGGTCGAGAAG GCGTGTTTTTCAGAAATCCTCTATTTGTCTCTTGTTTTTCACTCTTTTTT GTGGCGCGGGTCAAACAAAACGCGAAACAATCTCAGGCACTGGTCCTCCC CTCTCCCCTGCTGGACCATGTCAACTTTGTCGAAACCCCAAGTATCCTTC CGGCAAGGACTGAAGAAGGGCAGGGCGCGGGACAGGGCTACCCGTTCTTG GAGGTGAAAATAAAACCATGACCAAAAGACTGTAATAGTAGCCCATCGAT ACTGCACGAGGGGTTGGACATAACTGTACTGTATGTATGTCCTACTCTGC TTTAACCGCCTGTAGATGTAAATATATTTATGTGGTATATGCGGGGACAA AGAGTTGATCATGTATGTAGGCGTTTTTTTTTCTGGCACAAGGTTCCGTG CACCGCCCCCCTCTTGTCGCTCTTCTAGAACAACTGCGGCGTGCCATAGT TGCCCCATACAGCAGTATCCTATTAATAGTCGTTTGGCAAATGTTCTCGT GCTCTCGTGCTGGATTTGATATCTTACCCCTAGATGTATGTATGTCTCGA GGTACGGATCCTCTTATGTGTCCTCTTATGTATAGTATTATTAAATATTG CGCCGTCGCCGCCGCCGCCGCCGCGTGGTGTGGTTTTCAAAGGTGGTAGA GTGGTTCGCGGATAGATCGGACCTGATATTGTTGGTGTTCGACGCGCTGA AGCTCGACGTGTCCGAGGAGTTCCGCGAAGTGGTGGCGGCCGTTATCGCG CATTACGGGGACAGGGTGAGTCAAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig100751:221..1947+

>mRNA_H-elongata_contig100751.70.1 ID=mRNA_H-elongata_contig100751.70.1|Name=mRNA_H-elongata_contig100751.70.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig100751:221..1947+ (Himanthalia elongata Himel1 dioecious)
GACGAGCTGCCGTACGCCGGGCTCGGAAAGTTCGGCGCGCCGTTTCTCAG
AAAGTTCCAGGACGAGCTGCCGTACGCCGGGCTCGGAAAGTTCGGCGCGC
CGTTTCTCAGAAAGTTCCAGGCACTGGTCCTCCCCTCTCCCCTGCTGGAC
CATGTCAACTTTGTCGAAACCCCAAGTATCCTTCCGGCAAGGACTGAAGA
AGGGCAGGGCGCGGGACAGGGCTACCCGTTCTTGGAGGCACTGGTCCTCC
CCTCTCCCCTGCTGGACCATGTCAACTTTGTCGAAACCCCAAGTATCCTT
CCGGCAAGGACTGAAGAAGGGCAGGGCGCGGGACAGGGCTACCCGTTCTT
GGAGGTGGTAGAGTGGTTCGCGGATAGATCGGACCTGATATTGTTGGTGT
TCGACGCGCTGAAGCTCGACGTGTCCGAGGAGTTCCGCGAAGTGGTGGCG
GCCGTTATCGCGCATTACGGGGACAGGGTGAGTCAAGTTGTGGTAGAGTG
GTTCGCGGATAGATCGGACCTGATATTGTTGGTGTTCGACGCGCTGAAGC
TCGACGTGTCCGAGGAGTTCCGCGAAGTGGTGGCGGCCGTTATCGCGCAT
TACGGGGACAGGGTGAGTCAAGTT
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