mRNA_H-elongata_contig100750.69.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100750.69.1
Unique NamemRNA_H-elongata_contig100750.69.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: D7FKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.240e-29
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPKKL 232
            TTPLDVVRTRVM+AP+ D+ Y+GGV GAL +ISR+E F ALW G  PR+ RS+LSGAIQFG+YEFVKG FGVEP+KL
Sbjct:  332 TTPLDVVRTRVMTAPSDDEGYEGGVLGALGTISREESFSALWAGINPRMARSVLSGAIQFGSYEFVKGLFGVEPRKL 408
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A835YLX5_9STRA (Mitochondrial substrate/solute carrier (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.960e-17
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFF 211
            TTPLDVVRTR+M     D+ Y   V G L  I  +EGF ALW GTTPR+ RS+LSGAIQF +YEF KG F
Sbjct:   30 TTPLDVVRTRIMV----DKAYSS-VTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 94
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A836CA13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA13_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.570e-12
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:   74 VPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVE 220
            V G L  I  +EGF ALW GTTPR+ RS+LSGAIQF +YEF KG F  +
Sbjct:    4 VTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 52
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A7S2GJX0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJX0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-11
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:    2 TTPLDVVRTRVM-------SAPASDQPY--KGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVE 220
            TTPLD+VR R+M       +   +D     K G    L SI+R+EG   L++GT PR+ ++ LSGA+QFG+YEF K FF  E
Sbjct:   69 TTPLDIVRNRIMVSEPEQFTTTIADGSIREKEGYLDTLRSIAREEGVAGLFRGTVPRVGKAALSGAVQFGSYEFTKAFFAPE 150
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A7J7IND2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IND2_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 2.210e-10
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEP 223
            TTPLDVV+TR+M+     Q Y+G +  ++  I+R+EG GAL+ GTTPR+    L GA+ FG YE  K     +P
Sbjct:  106 TTPLDVVKTRLMTQSVGVQAYRG-IWASMQRIAREEGVGALFSGTTPRVLWISLGGALFFGGYEATKSLLTDQP 178
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A4D9D701_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D701_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.770e-9
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
            TTPLDVV+TR+M+          G+   LV ++R+EG GAL+KG  PR+    L GAI FGAYE  K
Sbjct:  283 TTPLDVVKTRLMTQRRGSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYEAFK 349
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: K8Z4E8_NANGC (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E8_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 1.840e-9
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
            TTPLDVV+TR+M+          G+   LV ++R+EG GAL+KG  PR+    L GAI FGAYE  K
Sbjct:  346 TTPLDVVKTRLMTQRRDSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYEAFK 412
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BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: M1V6P2_CYAM1 (Probable mitochondrial carrier proteins Pet8p n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6P2_CYAM1)

HSP 1 Score: 63.2 bits (152), Expect = 2.020e-9
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPK 226
            TTPLDVV+TR+M+  AS    +G + G +  I+R+EG G L+ GTTPR+    L GA+ FG YE  K      P+
Sbjct:  235 TTPLDVVKTRLMTRSASAATQQG-IWGTMQQIAREEGIGTLFSGTTPRILWISLGGALFFGGYEATKSLLMDRPR 308
[Close]
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A835Z0V7_9STRA (Mitochondrial phosphate carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.910e-9
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
            TTPLDVV+TR+M+           V   L  + R+EG GALW G  PR+T     GAI FGAYE+ K
Sbjct:  240 TTPLDVVKTRLMTQTLGSGTQYLNVMDCLKQVVREEGVGALWAGVVPRMTSIAFGGAIFFGAYEYAK 306
[Close]
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A1X6NJF7_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJF7_PORUM)

HSP 1 Score: 62.0 bits (149), Expect = 5.520e-9
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:    2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPKKL 232
            TTPLDVV+TR+M+  A   PYKG V G L  I+R+EG  AL  G  PR+    L GAI FG YE  K    + PK L
Sbjct:  246 TTPLDVVKTRMMTQKAGTVPYKGVVDG-LSRIAREEGAAALAAGMLPRVVWIALGGAIFFGGYEVTKAH--LTPKVL 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM9_ECTSI2.240e-2972.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX5_9STRA3.960e-1761.43Mitochondrial substrate/solute carrier (Fragment) ... [more]
A0A836CA13_9STRA7.570e-1261.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GJX0_9STRA2.870e-1145.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7J7IND2_9RHOD2.210e-1045.95Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A4D9D701_9STRA1.770e-949.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8Z4E8_NANGC1.840e-949.25S-adenosylmethionine mitochondrial carrier protein... [more]
M1V6P2_CYAM12.020e-945.33Probable mitochondrial carrier proteins Pet8p n=1 ... [more]
A0A835Z0V7_9STRA3.910e-947.76Mitochondrial phosphate carrier protein n=1 Tax=Tr... [more]
A0A1X6NJF7_PORUM5.520e-950.65Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100750contigH-elongata_contig100750:1073..2083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.9416115-CDS-H-elongata_contig100750:1072..11401622929548.9416115-CDS-H-elongata_contig100750:1072..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100750 1073..1140 +
1691679064.9279191-CDS-H-elongata_contig100750:1072..11401691679064.9279191-CDS-H-elongata_contig100750:1072..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100750 1073..1140 +
1622929548.9584014-CDS-H-elongata_contig100750:1816..20811622929548.9584014-CDS-H-elongata_contig100750:1816..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100750 1817..2081 +
1691679064.935994-CDS-H-elongata_contig100750:1816..20811691679064.935994-CDS-H-elongata_contig100750:1816..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100750 1817..2081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100750.69.1prot_H-elongata_contig100750.69.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100750 1073..2081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100750.69.1

>prot_H-elongata_contig100750.69.1 ID=prot_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
HDPAGRRANESHERSRERPALQRGGPWCACVHLSRRRLRGALEGNDATLD
SVDLEWGDTIRGVRVREGIFRRRAEKALNSEIIYGSFLEFRSCGCGAFLF
VCCPMSRPFRT
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mRNA from alignment at H-elongata_contig100750:1073..2083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100750.69.1 ID=mRNA_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-elongata_contig100750:1073..2083+ (Himanthalia elongata Himel1 dioecious)
CACGACCCCGCTGGACGTCGTGCGAACGAGAGTCATGAGCGCTCCCGCGA
GCGACCAGCCTTACAAAGGTTGTGCAGGGAAGTGTTTTTTCTTCTTTCTG
ATGTTTTACTTTATATGCATACTTTAACTCCTATTGAATTACTTTATCCT
TTTTTTTGGCTGGTATTAAGGTCTCACCGCGCGTGCTCTCTGAGATATCC
ACGCCTCCTCAGGGTTTCCTCTCTCACAATGACGTTTTTTTAAGGGGGGA
AGGGTTCGTTAGTAACATGCTTTTACTTTGTGAATCCCAGAAGCACCAGT
GGAAGCTAGCCTACGGAGGCAGATACACAGTAAGCCCCGTCAGAAAAGAG
AAGGGAACGTTCGCATCTATCATCGATTTCACCTTGCCAGGGGTTTCCAA
CCGCGCGGCGTATTTTACCACCGGGTGCTGAACGAAGAGTAGACTTTTGA
CTTTTTTTTTCTTAAAACAAATCTATCACGTGCCGGTACCGTTATCAAGA
GACGTCAAGATCGGAACCCACTGTTTTTTTTCTTTGCGACTTGCTCGAGG
TGGAAGGCTCTAAAATAATATATCCCTGAAACTACACGTTGAAAAGCTGT
GCTCGAGAACGACCCATTTTCGAGCCTCGAGGCGTCCGAGCTTTTGAGGC
GAGAACGGATGGTTGGAATGAAAAAAAAAATGAAAAAACGGAACTTATCC
AAATGTATCAACCCTATGCCTCTACCCCCTTGCCCTCTCCGCAGGGGGGG
TCCCTGGTGCGCTTGTGTCCATCTCTCGAGACGAAGGCTTCGGGGCGCTC
TGGAAGGGAACGACGCCACGCTTGACTCGGTCGATCTTGAGTGGGGCGAT
ACAATTCGGGGCGTACGAGTTCGTGAAGGGATTTTTCGGCGTCGAGCCGA
AAAAGCTCTGAATTCAGAAATTATCTACGGTAGTTTTTTAGAGTTCCGTT
CCTGCGGCTGCGGCGCATTTTTGTTTGTTTGTTGTCCCATGTCGCGTCCG
TTTCGTACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig100750:1073..2083+

>mRNA_H-elongata_contig100750.69.1 ID=mRNA_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig100750:1073..2083+ (Himanthalia elongata Himel1 dioecious)
CACGACCCCGCTGGACGTCGTGCGAACGAGAGTCATGAGCGCTCCCGCGA
GCGACCAGCCTTACAAAGCACGACCCCGCTGGACGTCGTGCGAACGAGAG
TCATGAGCGCTCCCGCGAGCGACCAGCCTTACAAAGGGGGGGTCCCTGGT
GCGCTTGTGTCCATCTCTCGAGACGAAGGCTTCGGGGCGCTCTGGAAGGG
AACGACGCCACGCTTGACTCGGTCGATCTTGAGTGGGGCGATACAATTCG
GGGCGTACGAGTTCGTGAAGGGATTTTTCGGCGTCGAGCCGAAAAAGCTC
TGAATTCAGAAATTATCTACGGTAGTTTTTTAGAGTTCCGTTCCTGCGGC
TGCGGCGCATTTTTGTTTGTTTGTTGTCCCATGTCGCGTCCGTTTCGTAC
GGGGGGGTCCCTGGTGCGCTTGTGTCCATCTCTCGAGACGAAGGCTTCGG
GGCGCTCTGGAAGGGAACGACGCCACGCTTGACTCGGTCGATCTTGAGTG
GGGCGATACAATTCGGGGCGTACGAGTTCGTGAAGGGATTTTTCGGCGTC
GAGCCGAAAAAGCTCTGAATTCAGAAATTATCTACGGTAGTTTTTTAGAG
TTCCGTTCCTGCGGCTGCGGCGCATTTTTGTTTGTTTGTTGTCCCATGTC
GCGTCCGTTTCGTACG
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