mRNA_H-elongata_contig100750.69.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: D7FKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM9_ECTSI) HSP 1 Score: 118 bits (295), Expect = 2.240e-29 Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPKKL 232
TTPLDVVRTRVM+AP+ D+ Y+GGV GAL +ISR+E F ALW G PR+ RS+LSGAIQFG+YEFVKG FGVEP+KL
Sbjct: 332 TTPLDVVRTRVMTAPSDDEGYEGGVLGALGTISREESFSALWAGINPRMARSVLSGAIQFGSYEFVKGLFGVEPRKL 408
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A835YLX5_9STRA (Mitochondrial substrate/solute carrier (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.960e-17 Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFF 211
TTPLDVVRTR+M D+ Y V G L I +EGF ALW GTTPR+ RS+LSGAIQF +YEF KG F
Sbjct: 30 TTPLDVVRTRIMV----DKAYSS-VTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 94
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A836CA13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA13_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 7.570e-12 Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 2 Query: 74 VPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVE 220
V G L I +EGF ALW GTTPR+ RS+LSGAIQF +YEF KG F +
Sbjct: 4 VTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 52
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A7S2GJX0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJX0_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.870e-11 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 2 TTPLDVVRTRVM-------SAPASDQPY--KGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVE 220
TTPLD+VR R+M + +D K G L SI+R+EG L++GT PR+ ++ LSGA+QFG+YEF K FF E
Sbjct: 69 TTPLDIVRNRIMVSEPEQFTTTIADGSIREKEGYLDTLRSIAREEGVAGLFRGTVPRVGKAALSGAVQFGSYEFTKAFFAPE 150
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A7J7IND2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IND2_9RHOD) HSP 1 Score: 64.3 bits (155), Expect = 2.210e-10 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEP 223
TTPLDVV+TR+M+ Q Y+G + ++ I+R+EG GAL+ GTTPR+ L GA+ FG YE K +P
Sbjct: 106 TTPLDVVKTRLMTQSVGVQAYRG-IWASMQRIAREEGVGALFSGTTPRVLWISLGGALFFGGYEATKSLLTDQP 178
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A4D9D701_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D701_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.770e-9 Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
TTPLDVV+TR+M+ G+ LV ++R+EG GAL+KG PR+ L GAI FGAYE K
Sbjct: 283 TTPLDVVKTRLMTQRRGSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYEAFK 349
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: K8Z4E8_NANGC (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E8_NANGC) HSP 1 Score: 63.5 bits (153), Expect = 1.840e-9 Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
TTPLDVV+TR+M+ G+ LV ++R+EG GAL+KG PR+ L GAI FGAYE K
Sbjct: 346 TTPLDVVKTRLMTQRRDSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYEAFK 412
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: M1V6P2_CYAM1 (Probable mitochondrial carrier proteins Pet8p n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6P2_CYAM1) HSP 1 Score: 63.2 bits (152), Expect = 2.020e-9 Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPK 226
TTPLDVV+TR+M+ AS +G + G + I+R+EG G L+ GTTPR+ L GA+ FG YE K P+
Sbjct: 235 TTPLDVVKTRLMTRSASAATQQG-IWGTMQQIAREEGIGTLFSGTTPRILWISLGGALFFGGYEATKSLLMDRPR 308
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A835Z0V7_9STRA (Mitochondrial phosphate carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V7_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.910e-9 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVK 202
TTPLDVV+TR+M+ V L + R+EG GALW G PR+T GAI FGAYE+ K
Sbjct: 240 TTPLDVVKTRLMTQTLGSGTQYLNVMDCLKQVVREEGVGALWAGVVPRMTSIAFGGAIFFGAYEYAK 306
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Match: A0A1X6NJF7_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJF7_PORUM) HSP 1 Score: 62.0 bits (149), Expect = 5.520e-9 Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 2 Query: 2 TTPLDVVRTRVMSAPASDQPYKGGVPGALVSISRDEGFGALWKGTTPRLTRSILSGAIQFGAYEFVKGFFGVEPKKL 232
TTPLDVV+TR+M+ A PYKG V G L I+R+EG AL G PR+ L GAI FG YE K + PK L
Sbjct: 246 TTPLDVVKTRMMTQKAGTVPYKGVVDG-LSRIAREEGAAALAAGMLPRVVWIALGGAIFFGGYEVTKAH--LTPKVL 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100750.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100750.69.1 >prot_H-elongata_contig100750.69.1 ID=prot_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp HDPAGRRANESHERSRERPALQRGGPWCACVHLSRRRLRGALEGNDATLDback to top mRNA from alignment at H-elongata_contig100750:1073..2083+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100750.69.1 ID=mRNA_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-elongata_contig100750:1073..2083+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100750:1073..2083+ >mRNA_H-elongata_contig100750.69.1 ID=mRNA_H-elongata_contig100750.69.1|Name=mRNA_H-elongata_contig100750.69.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig100750:1073..2083+ (Himanthalia elongata Himel1 dioecious)back to top |