mRNA_H-elongata_contig100740.68.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100740.68.1
Unique NamemRNA_H-elongata_contig100740.68.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.860e-99
Identity = 143/301 (47.51%), Postives = 187/301 (62.13%), Query Frame = 1 
Query:   43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQ---------NYHVAEN--GTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCNDG---CYVDSNTDGILCGCDVENDSGLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVGAXXXXXXXXXXXXXXXXXAIARPHHVANHRFELIRIGIFGLVWCCVWAIAVVIWGGVDGARYVSMM 903
            +  G  PD+PM++ +MKV+AGYYT DGKYLGG+PKAD +S+EIY+C          N  V ++  G    T C+EW+A+ESAG  FQ G CEC  I +E YCSAWTC   +  E CN     C V +NTD +LC CD++  SGL+CD+WSCKQIDS+GR E+E Y+C R           NGNVTASDE+EVV CEC   W GD +CSYWECEE+GL+ C +S +GWC+LGLS+G                  +             ++  G+ G++WC VW++ VVIWGG+DG  YV +M
Sbjct:   48 IVGGVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAVLCQCDLDVPSGLYCDSWSCKQIDSDGREEFEEYHCQREXXXXXXXXXXNGNVTASDEVEVVTCECVATWSGDRLCSYWECEEIGLSSC-NSTRGWCDLGLSIGLAGVFGLAGALAAGFSFASFGCFERSTTGMRAVVCTGVGGILWCMVWSVGVVIWGGLDGVVYVGIM 347
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BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.890e-87
Identity = 143/320 (44.69%), Postives = 178/320 (55.62%), Query Frame = 1 
Query:   43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQNYHVAE--NGTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCNDGCYVDSNTDGILCGCDVENDS-GLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVGAXXXXXXXXXXXXXXXXXAIARPHHVANHRFELIRIGI-FGLVWCCVWAIAVVIWGGVDGARYVSMMXXXXXXATLIVVMCYNTLEIIRIRGNNEE 990
            VAR ELPDFPM+  +M+V+AGYY+ADGKYLGG+PKA  LSREIYDC ++  +E  N   N T C  W A+ES G  FQ+G CEC+F               E             N+D  LC CD    + GL     SCKQI S GR E+E Y C R SPSGHYCEAWNGNVTASDE E+V+CEC   W GD+VCS+WECEELGL+ C+S+   WC+LG+S+G                   + R             +GI  G VWC  W+  VVIWGG  GA YV +M         +V   +    + R+R  +E+
Sbjct:   50 VARAELPDFPMTLADMEVLAGYYSADGKYLGGMPKAHTLSREIYDCTDFQYSEPNNTASNATYCTGWSADESYGGGFQLGDCECKFSXXXXXXXXXXXXXQE-------------NSDYTLCQCDDTGAAEGLXXXXXSCKQICSGGRAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTCSSAGASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQSDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMWGVPIVLAAVVA-AFRCFAVYRVRTKDEQ 355
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BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: A0A6H5JXC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC2_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 6.690e-57
Identity = 105/231 (45.45%), Postives = 129/231 (55.84%), Query Frame = 1 
Query:   43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQNYH-------VAENGTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCN---DGCYVDSNTDGILCGCDVENDSGLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVG 705
            + RGE PD+PM++ +MKV+AGYYT DGK             EIY+C           +A +  G  T C+EW+A+ESAG                 YCSAW C      E CN   D C+V +NT+ +LC CD+E  SGL+CD+WSCKQIDSEGR E+E YYC R           NGNVTASDE+EVV CEC        V +Y      GL  C SS +GWC+LGLSVG
Sbjct:   24 IVRGEFPDYPMTFTDMKVLAGYYTEDGK-------------EIYECATDGFFYPTDTMANSTDGEATACMEWRADESAG-----------------YCSAWICIQVAEVEECNSDGDSCFVSTNTNSVLCQCDLETASGLYCDSWSCKQIDSEGREEFEEYYCQRXXXXXXXXXXXNGNVTASDEVEVVTCECVAT---GTVITY------GLKSC-SSIRGWCDLGLSVG 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G428_ECTSI1.860e-9947.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FR75_ECTSI1.890e-8744.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXC2_9PHAE6.690e-5745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100740contigH-elongata_contig100740:501..1499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size999
Cds size990
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.8839655-UTR-H-elongata_contig100740:500..5091622929548.8839655-UTR-H-elongata_contig100740:500..509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100740 501..509 +
1691679064.9075391-UTR-H-elongata_contig100740:500..5091691679064.9075391-UTR-H-elongata_contig100740:500..509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100740 501..509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.8996882-CDS-H-elongata_contig100740:509..14991622929548.8996882-CDS-H-elongata_contig100740:509..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100740 510..1499 +
1691679064.9201708-CDS-H-elongata_contig100740:509..14991691679064.9201708-CDS-H-elongata_contig100740:509..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100740 510..1499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100740.68.1prot_H-elongata_contig100740.68.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100740 510..1499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100740.68.1

>prot_H-elongata_contig100740.68.1 ID=prot_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MVLVFLLTGMIVARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKL
SREIYDCQNYHVAENGTGNTTVCLEWKANESAGDEFQVGLCECRFITDEA
YCSAWTCYHTEMGEYCNDGCYVDSNTDGILCGCDVENDSGLFCDAWSCKQ
IDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEG
DEVCSYWECEELGLNKCASSNKGWCNLGLSVGAGGGIGIIGVFFLCLCIC
AIARPHHVANHRFELIRIGIFGLVWCCVWAIAVVIWGGVDGARYVSMMWG
GLIGATLIVVMCYNTLEIIRIRGNNEENT*
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mRNA from alignment at H-elongata_contig100740:501..1499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100740.68.1 ID=mRNA_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig100740:501..1499+ (Himanthalia elongata Himel1 dioecious)
AAGACAATCATGGTCCTCGTTTTCCTCCTTACCGGTATGATTGTCGCGCG
AGGAGAGCTTCCAGACTTTCCAATGAGCTATGGGGAGATGAAAGTAGTCG
CTGGATATTACACAGCCGACGGCAAGTACCTTGGTGGTCTCCCTAAGGCT
GATAAATTGAGTCGAGAGATCTACGACTGTCAGAACTACCATGTTGCGGA
GAATGGAACAGGGAACACAACTGTTTGCTTGGAGTGGAAGGCGAACGAAT
CGGCTGGAGATGAATTCCAAGTGGGATTGTGCGAGTGCAGGTTCATCACA
GACGAGGCGTACTGTTCCGCTTGGACCTGCTACCACACGGAAATGGGGGA
GTACTGTAACGATGGCTGCTACGTCGATAGCAACACCGACGGTATACTCT
GCGGCTGCGACGTTGAAAATGATTCTGGACTTTTCTGCGACGCGTGGTCG
TGCAAACAGATCGACTCCGAAGGCAGAGTGGAGTATGAATCGTACTATTG
TCTGCGCACTTCGCCCTCCGGTCACTACTGCGAGGCGTGGAACGGGAACG
TTACTGCAAGCGACGAAATCGAAGTTGTCGCTTGTGAGTGCCAGCAAGAG
TGGGAAGGTGATGAAGTATGCTCGTACTGGGAATGCGAAGAACTCGGTCT
TAACAAATGTGCAAGCTCCAATAAGGGCTGGTGCAACTTGGGCTTGTCAG
TGGGCGCTGGGGGAGGCATCGGAATCATCGGTGTCTTTTTTCTGTGCTTA
TGTATTTGTGCAATCGCTCGCCCCCATCATGTAGCCAATCATCGATTCGA
ATTGATCCGCATTGGAATTTTTGGCCTGGTCTGGTGCTGCGTATGGGCAA
TCGCCGTTGTTATTTGGGGTGGGGTAGATGGAGCCAGGTACGTGAGCATG
ATGTGGGGAGGTCTTATTGGCGCGACGCTCATCGTAGTTATGTGTTACAA
CACTCTGGAGATCATACGGATTCGAGGCAACAACGAGGAGAACACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig100740:501..1499+

>mRNA_H-elongata_contig100740.68.1 ID=mRNA_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig100740:501..1499+ (Himanthalia elongata Himel1 dioecious)
ATGGTCCTCGTTTTCCTCCTTACCGGTATGATTGTCGCGCGAGGAGAGCT
TCCAGACTTTCCAATGAGCTATGGGGAGATGAAAGTAGTCGCTGGATATT
ACACAGCCGACGGCAAGTACCTTGGTGGTCTCCCTAAGGCTGATAAATTG
AGTCGAGAGATCTACGACTGTCAGAACTACCATGTTGCGGAGAATGGAAC
AGGGAACACAACTGTTTGCTTGGAGTGGAAGGCGAACGAATCGGCTGGAG
ATGAATTCCAAGTGGGATTGTGCGAGTGCAGGTTCATCACAGACGAGGCG
TACTGTTCCGCTTGGACCTGCTACCACACGGAAATGGGGGAGTACTGTAA
CGATGGCTGCTACGTCGATAGCAACACCGACGGTATACTCTGCGGCTGCG
ACGTTGAAAATGATTCTGGACTTTTCTGCGACGCGTGGTCGTGCAAACAG
ATCGACTCCGAAGGCAGAGTGGAGTATGAATCGTACTATTGTCTGCGCAC
TTCGCCCTCCGGTCACTACTGCGAGGCGTGGAACGGGAACGTTACTGCAA
GCGACGAAATCGAAGTTGTCGCTTGTGAGTGCCAGCAAGAGTGGGAAGGT
GATGAAGTATGCTCGTACTGGGAATGCGAAGAACTCGGTCTTAACAAATG
TGCAAGCTCCAATAAGGGCTGGTGCAACTTGGGCTTGTCAGTGGGCGCTG
GGGGAGGCATCGGAATCATCGGTGTCTTTTTTCTGTGCTTATGTATTTGT
GCAATCGCTCGCCCCCATCATGTAGCCAATCATCGATTCGAATTGATCCG
CATTGGAATTTTTGGCCTGGTCTGGTGCTGCGTATGGGCAATCGCCGTTG
TTATTTGGGGTGGGGTAGATGGAGCCAGGTACGTGAGCATGATGTGGGGA
GGTCTTATTGGCGCGACGCTCATCGTAGTTATGTGTTACAACACTCTGGA
GATCATACGGATTCGAGGCAACAACGAGGAGAACACGTAGATGGTCCTCG
TTTTCCTCCTTACCGGTATGATTGTCGCGCGAGGAGAGCTTCCAGACTTT
CCAATGAGCTATGGGGAGATGAAAGTAGTCGCTGGATATTACACAGCCGA
CGGCAAGTACCTTGGTGGTCTCCCTAAGGCTGATAAATTGAGTCGAGAGA
TCTACGACTGTCAGAACTACCATGTTGCGGAGAATGGAACAGGGAACACA
ACTGTTTGCTTGGAGTGGAAGGCGAACGAATCGGCTGGAGATGAATTCCA
AGTGGGATTGTGCGAGTGCAGGTTCATCACAGACGAGGCGTACTGTTCCG
CTTGGACCTGCTACCACACGGAAATGGGGGAGTACTGTAACGATGGCTGC
TACGTCGATAGCAACACCGACGGTATACTCTGCGGCTGCGACGTTGAAAA
TGATTCTGGACTTTTCTGCGACGCGTGGTCGTGCAAACAGATCGACTCCG
AAGGCAGAGTGGAGTATGAATCGTACTATTGTCTGCGCACTTCGCCCTCC
GGTCACTACTGCGAGGCGTGGAACGGGAACGTTACTGCAAGCGACGAAAT
CGAAGTTGTCGCTTGTGAGTGCCAGCAAGAGTGGGAAGGTGATGAAGTAT
GCTCGTACTGGGAATGCGAAGAACTCGGTCTTAACAAATGTGCAAGCTCC
AATAAGGGCTGGTGCAACTTGGGCTTGTCAGTGGGCGCTGGGGGAGGCAT
CGGAATCATCGGTGTCTTTTTTCTGTGCTTATGTATTTGTGCAATCGCTC
GCCCCCATCATGTAGCCAATCATCGATTCGAATTGATCCGCATTGGAATT
TTTGGCCTGGTCTGGTGCTGCGTATGGGCAATCGCCGTTGTTATTTGGGG
TGGGGTAGATGGAGCCAGGTACGTGAGCATGATGTGGGGAGGTCTTATTG
GCGCGACGCTCATCGTAGTTATGTGTTACAACACTCTGGAGATCATACGG
ATTCGAGGCAACAACGAGGAGAACACGTAG
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