mRNA_H-elongata_contig100740.68.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI) HSP 1 Score: 306 bits (785), Expect = 1.860e-99 Identity = 143/301 (47.51%), Postives = 187/301 (62.13%), Query Frame = 1 Query: 43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQ---------NYHVAEN--GTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCNDG---CYVDSNTDGILCGCDVENDSGLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVGAXXXXXXXXXXXXXXXXXAIARPHHVANHRFELIRIGIFGLVWCCVWAIAVVIWGGVDGARYVSMM 903
+ G PD+PM++ +MKV+AGYYT DGKYLGG+PKAD +S+EIY+C N V ++ G T C+EW+A+ESAG FQ G CEC I +E YCSAWTC + E CN C V +NTD +LC CD++ SGL+CD+WSCKQIDS+GR E+E Y+C R NGNVTASDE+EVV CEC W GD +CSYWECEE+GL+ C +S +GWC+LGLS+G + ++ G+ G++WC VW++ VVIWGG+DG YV +M
Sbjct: 48 IVGGVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAVLCQCDLDVPSGLYCDSWSCKQIDSDGREEFEEYHCQREXXXXXXXXXXNGNVTASDEVEVVTCECVATWSGDRLCSYWECEEIGLSSC-NSTRGWCDLGLSIGLAGVFGLAGALAAGFSFASFGCFERSTTGMRAVVCTGVGGILWCMVWSVGVVIWGGLDGVVYVGIM 347
BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI) HSP 1 Score: 276 bits (705), Expect = 1.890e-87 Identity = 143/320 (44.69%), Postives = 178/320 (55.62%), Query Frame = 1 Query: 43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQNYHVAE--NGTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCNDGCYVDSNTDGILCGCDVENDS-GLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVGAXXXXXXXXXXXXXXXXXAIARPHHVANHRFELIRIGI-FGLVWCCVWAIAVVIWGGVDGARYVSMMXXXXXXATLIVVMCYNTLEIIRIRGNNEE 990
VAR ELPDFPM+ +M+V+AGYY+ADGKYLGG+PKA LSREIYDC ++ +E N N T C W A+ES G FQ+G CEC+F E N+D LC CD + GL SCKQI S GR E+E Y C R SPSGHYCEAWNGNVTASDE E+V+CEC W GD+VCS+WECEELGL+ C+S+ WC+LG+S+G + R +GI G VWC W+ VVIWGG GA YV +M +V + + R+R +E+
Sbjct: 50 VARAELPDFPMTLADMEVLAGYYSADGKYLGGMPKAHTLSREIYDCTDFQYSEPNNTASNATYCTGWSADESYGGGFQLGDCECKFSXXXXXXXXXXXXXQE-------------NSDYTLCQCDDTGAAEGLXXXXXSCKQICSGGRAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTCSSAGASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQSDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMWGVPIVLAAVVA-AFRCFAVYRVRTKDEQ 355
BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Match: A0A6H5JXC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC2_9PHAE) HSP 1 Score: 193 bits (490), Expect = 6.690e-57 Identity = 105/231 (45.45%), Postives = 129/231 (55.84%), Query Frame = 1 Query: 43 VARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLSREIYDCQNYH-------VAENGTGNTTVCLEWKANESAGDEFQVGLCECRFITDEAYCSAWTCYHTEMGEYCN---DGCYVDSNTDGILCGCDVENDSGLFCDAWSCKQIDSEGRVEYESYYCLRTSPSGHYCEAWNGNVTASDEIEVVACECQQEWEGDEVCSYWECEELGLNKCASSNKGWCNLGLSVG 705
+ RGE PD+PM++ +MKV+AGYYT DGK EIY+C +A + G T C+EW+A+ESAG YCSAW C E CN D C+V +NT+ +LC CD+E SGL+CD+WSCKQIDSEGR E+E YYC R NGNVTASDE+EVV CEC V +Y GL C SS +GWC+LGLSVG
Sbjct: 24 IVRGEFPDYPMTFTDMKVLAGYYTEDGK-------------EIYECATDGFFYPTDTMANSTDGEATACMEWRADESAG-----------------YCSAWICIQVAEVEECNSDGDSCFVSTNTNSVLCQCDLETASGLYCDSWSCKQIDSEGREEFEEYYCQRXXXXXXXXXXXNGNVTASDEVEVVTCECVAT---GTVITY------GLKSC-SSIRGWCDLGLSVG 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100740.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100740.68.1 >prot_H-elongata_contig100740.68.1 ID=prot_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp MVLVFLLTGMIVARGELPDFPMSYGEMKVVAGYYTADGKYLGGLPKADKLback to top mRNA from alignment at H-elongata_contig100740:501..1499+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100740.68.1 ID=mRNA_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig100740:501..1499+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100740:501..1499+ >mRNA_H-elongata_contig100740.68.1 ID=mRNA_H-elongata_contig100740.68.1|Name=mRNA_H-elongata_contig100740.68.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig100740:501..1499+ (Himanthalia elongata Himel1 dioecious)back to top |