mRNA_H-elongata_contig100626.61.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100626.61.1
Unique NamemRNA_H-elongata_contig100626.61.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.630e-59
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 3
Query:   15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGAEEGLRANASAGGDYD 395
            Q+ MSGQDQFHVLHQH  +VGPAAKALLLSTYAKLANLYPECRELV PVFERFSSSQNLELQQR+CEYL LPE GIDVMEEVLKEMP+FPE RESGPEARLRRRLEEQE GAEEGLR + + G D D
Sbjct:  524 QDEMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPVFERFSSSQNLELQQRSCEYLGLPEMGIDVMEEVLKEMPSFPEDRESGPEARLRRRLEEQELGAEEGLRVSGAGGVDND 650          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: D7FKE1_ECTSI (AP-1 complex subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE1_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.180e-52
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 3
Query:   15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRR 326
            Q+ MSGQDQFHVLHQH  +VGPAAKALLLSTYAKLANLYPECRELV PVFERFSSSQNLELQQR+CEYL LPE GIDVMEEVLKEMP+FPE RESGPEARLRRR
Sbjct:  520 QDKMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPVFERFSSSQNLELQQRSCEYLGLPEMGIDVMEEVLKEMPSFPEDRESGPEARLRRR 623          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A836C8G3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G3_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.650e-44
Identity = 80/112 (71.43%), Postives = 93/112 (83.04%), Query Frame = 3
Query:   15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGA 350
            QEGM G  QF  LHQH  D  P  +ALLLSTYAKLANLYPECR LV PVFE++++S NLELQQR+CEY+ LP+ G++VMEEVLKEMP FPE+RESGPEARLR RLE+ E+GA
Sbjct:  546 QEGMGGDAQFAALHQHFADASPGTRALLLSTYAKLANLYPECRALVTPVFEKYAASNNLELQQRSCEYMALPKVGLEVMEEVLKEMPPFPENRESGPEARLRERLEKAEQGA 657          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S3Y381_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y381_HETAK)

HSP 1 Score: 113 bits (282), Expect = 7.830e-29
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAA---KALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGAEEGLRANAS 377
            GMSG++Q  VL QH   + P+A   KALLLSTYAKLANLY ECR   +  F R   S +LELQQRA EYL LP+ G +V+E+VL+EMP FPE R S  E RLRR   ++ K AE+    NA+
Sbjct:   11 GMSGEEQLQVLQQHFEVLEPSASGTKALLLSTYAKLANLYEECRPAADAAFRRLRRSTDLELQQRAAEYLGLPQQGPEVVEDVLREMPPFPEGRASALEERLRR---QERKKAEDPFATNAN 129          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: W7TFV9_9STRA (AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.160e-26
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:   15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQE 341
            Q G  G+ Q  VL +H     P  KALLLSTYAKL NLYPE R LV P FE+++ S  LELQQRACEY  L   G D+++ VL+EMPA+PE +ES  EARLR++ E  E
Sbjct:  572 QPGRGGEVQVRVLQKHFAGTTPRTKALLLSTYAKLENLYPEVRPLVLPTFEKYTPSTELELQQRACEYASLVSQGDDILDGVLQEMPAWPEDKESALEARLRKKQEASE 680          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2D3G0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3G0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.560e-25
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARL 317
            G SG+DQF+VL QH  +  P  +  +L+   K++NLYPECRELV P+FER  +S +LE QQRA EY  LP  G ++ME++L+EMP+F   R+S  E RL
Sbjct:   55 GRSGEDQFNVLMQHFSNASPKTQYQMLTAIMKISNLYPECRELVTPIFERLRASGDLETQQRANEYAMLPSLGEEMMEDILREMPSFNSDRKSALEERL 153          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: K0R582_THAOC (AP-2 complex subunit alpha n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R582_THAOC)

HSP 1 Score: 109 bits (273), Expect = 4.790e-25
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARL 317
            GMSG++QFHVLHQH F+VG + K++L+STYAKLANLY ECR LV PVF R  +S ++E+QQR  EY  + E    + +E++L+EMP F + R S  E RL
Sbjct:  541 GMSGEEQFHVLHQHWFNVGTSTKSILISTYAKLANLYEECRPLVAPVFARSKNSSDVEVQQRCAEYSSMREAFSPEAVEDLLREMPPFEDKRRSALEMRL 640          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2UKM4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKM4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.150e-23
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARLR 320
            GMSG+DQF VLHQH        +A+L+STYAKLANLY ECR LV PVF R  +S ++E+QQRA EY  + E    + +E++L+EMP F +SR+S  E RLR
Sbjct:   28 GMSGEDQFRVLHQHWATADMKTRAILISTYAKLANLYEECRPLVAPVFARCKNSVDVEIQQRAAEYSAMREAFDAETVEDLLREMPPFEDSRQSALETRLR 128          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2L0R2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L0R2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.820e-22
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARL 317
            GMSG++QFHVLHQH ++V    +++L+S+YAKLANLY ECR LV PVF +  +S ++E+QQR  EY  + E    + +E++L+EMP F + R S  E RL
Sbjct:  547 GMSGEEQFHVLHQHWYNVDTQTRSILISSYAKLANLYEECRPLVAPVFAKSKNSVDVEVQQRCAEYASMREAFSPEAVEDLLREMPPFEDKRRSALELRL 646          
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2WLX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLX7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.870e-22
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARLR 320
            GMSG++QF +LHQH  +     +A+L+STYAKLANLY ECR LV PVF R  +S ++E+QQR+ EY  + E+   + +E++L+EMP F E R+S  E RL+
Sbjct:  567 GMSGEEQFRILHQHWHNCNAQTRAILVSTYAKLANLYEECRPLVAPVFTRCKNSVDVEIQQRSAEYAAMRESFSPEAVEDLLREMPPFEERRQSALELRLK 667          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7E0_9PHAE1.630e-5985.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKE1_ECTSI1.180e-5289.42AP-1 complex subunit gamma n=1 Tax=Ectocarpus sili... [more]
A0A836C8G3_9STRA2.650e-4471.43AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]
A0A7S3Y381_HETAK7.830e-2954.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TFV9_9STRA1.160e-2655.96AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae... [more]
A0A7S2D3G0_9STRA1.560e-2551.52Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
K0R582_THAOC4.790e-2555.00AP-2 complex subunit alpha n=1 Tax=Thalassiosira o... [more]
A0A7S2UKM4_9STRA2.150e-2354.46Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2L0R2_9STRA5.820e-2250.00Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
A0A7S2WLX7_9STRA7.870e-2250.50Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100626contigH-elongata_contig100626:551..2125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size440
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100626.61.1prot_H-elongata_contig100626.61.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100626 1540..2125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.870325-UTR-H-elongata_contig100626:550..6651622929547.870325-UTR-H-elongata_contig100626:550..665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 551..665 -
1691679064.2871332-UTR-H-elongata_contig100626:550..6651691679064.2871332-UTR-H-elongata_contig100626:550..665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 551..665 -
1622929547.8888462-UTR-H-elongata_contig100626:1153..12211622929547.8888462-UTR-H-elongata_contig100626:1153..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 1154..1221 -
1691679064.3143964-UTR-H-elongata_contig100626:1153..12211691679064.3143964-UTR-H-elongata_contig100626:1153..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 1154..1221 -
1622929547.904658-UTR-H-elongata_contig100626:1504..15391622929547.904658-UTR-H-elongata_contig100626:1504..1539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 1505..1539 -
1691679064.3284266-UTR-H-elongata_contig100626:1504..15391691679064.3284266-UTR-H-elongata_contig100626:1504..1539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100626 1505..1539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.9268346-CDS-H-elongata_contig100626:1539..16031622929547.9268346-CDS-H-elongata_contig100626:1539..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100626 1540..1603 -
1691679064.3482244-CDS-H-elongata_contig100626:1539..16031691679064.3482244-CDS-H-elongata_contig100626:1539..1603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100626 1540..1603 -
1622929547.9450066-CDS-H-elongata_contig100626:1967..21251622929547.9450066-CDS-H-elongata_contig100626:1967..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100626 1968..2125 -
1691679064.3607438-CDS-H-elongata_contig100626:1967..21251691679064.3607438-CDS-H-elongata_contig100626:1967..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100626 1968..2125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100626.61.1

>prot_H-elongata_contig100626.61.1 ID=prot_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVAVTRRACRVRTSFTSCTSICSTSARRPRPCSSAPTRSSRTSIPNAESW
LIRCSSVLAAARTWSCSRELAST*
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mRNA from alignment at H-elongata_contig100626:551..2125-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100626.61.1 ID=mRNA_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1575bp|location=Sequence derived from alignment at H-elongata_contig100626:551..2125- (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCGTTACCAGGAGGGCATGTCGGGTCAGGACCAGTTTCACGTC TTGCACCAGCATCTGTTCGACGTCGGCCCGGCGGCCAAGGCCCTGCTCCT CAGCACCTACGCGAAGCTCGCGAACCTCTATCCCGAATGCCGAGAGCTGG TTAATCCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA CGACGTTTTGGGGGGTGTAGGCGTTGGTGGGAGTTGTAGTGGTTAGGTTG GGTGCCTCGCGTAGCGGGGATTAGGAAGGGATATCTCCCCTACCCACCCT ATCCCTAATAAACCCGATGTCATTTTGCTTTCATCGAAGACTTTCGTTTT TATAGGGATCATTATGTATGTATTTAAGAGGTATACTTAACATGTAGATT TATATATCCGTCCTTTTCTCTGCACATGTATGTCTTTTTCTTAGACTCGC TTCACCCGTTTCGATCGACCGACCAACCGACCGCGCATCTTATTTGGTGG CCGGGGATTGCTCGCCAACAAGGTGTTCGAGCGTTTTAGCAGCAGCCAGA ACCTGGAGCTGCAGCAGAGAGCTTGCGAGTACCTAGAGCTTCCTGAAACA GGCATCGACGTCATGGAGGAGGTGGGCTGATATATGGCAATGGGGTGATG GGGTGATGAGGCCGTTTTTTTGTTCTGTTATTGTGTTATTTTTTGTGAGG GGTTGGGGGGGAGGGGGGGGTTGTCCATCGTTGACCATTCGGTGACATGC GGCTAACGTTCCGTCGTTGACCTTTTGTTGAGATTTACAACGATACTCGT GTATTATTAACGGCGTGTGTGTATGTGCTTTGTTTTTTTGTTTCCTTATT TGCTGTGTATGTCTCTCTCTTGAAAACGATACCATTTAAATATCTACTCT AAAGGTGCTGAAAGAGATGCCTGCCTTCCCTGAGTCGAGGGAGAGTGGAC CAGAGGCCAGACTACGCCGGAGGTATGTGGCAGTTTATAGGGTTTTTGTT GTTGCTGGTCGCCTAATGACGACCAGCAGGGAACAGAAACGCCTTCTGGA AGACATGACCCGTGTACACCGGGCATACTATTAAGAGTACAGTAGTTATA CCGCAAAATATCGACAACGGGGCTTTTTATATTTCGGGACAACGAGGGTG CTATATTATACTATACTATACTATACTATACTATACTGTACTGTACTATA CTATACTACTATACTGTACTGTACTATACTACTATACTATACTGTACTGT ACTGTACTGTACTAAACTATACTATACTATACTATACTATACTATACACT ATACTACACTATACTGTACTATACTGTACTATACTATACTATACTATACT ATACTGTACTATACTATAGGATGTTTTTCATCTACCAGCTCATACGAAGT ACATCCACCCATCCATCTGATGCCGCACGCCGCAACGTCTTCGCCCTGCC ACCCCGCCAGGCTGGAGGAGCAGGAGAAGGGCGCGGAGGAGGGGCTGCGA GCAAATGCCAGCGCTGGGGGGGACTATGACGCCGGCGCTGGAATTGGAGA GAACGGCGACAGCGACGGTCAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig100626:551..2125-

>mRNA_H-elongata_contig100626.61.1 ID=mRNA_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig100626:551..2125- (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCGTTACCAGGAGGGCATGTCGGGTCAGGACCAGTTTCACGTC
TTGCACCAGCATCTGTTCGACGTCGGCCCGGCGGCCAAGGCCCTGCTCCT
CAGCACCTACGCGAAGCTCGCGAACCTCTATCCCGAATGCCGAGAGCTGG
TTAATCCGATGGTCGCCGTTACCAGGAGGGCATGTCGGGTCAGGACCAGT
TTCACGTCTTGCACCAGCATCTGTTCGACGTCGGCCCGGCGGCCAAGGCC
CTGCTCCTCAGCACCTACGCGAAGCTCGCGAACCTCTATCCCGAATGCCG
AGAGCTGGTTAATCCGGTGTTCGAGCGTTTTAGCAGCAGCCAGAACCTGG
AGCTGCAGCAGAGAGCTTGCGAGTACCTAGGTGTTCGAGCGTTTTAGCAG
CAGCCAGAACCTGGAGCTGCAGCAGAGAGCTTGCGAGTACCTAG
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