mRNA_H-elongata_contig100626.61.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.630e-59 Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 3 Query: 15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGAEEGLRANASAGGDYD 395 Q+ MSGQDQFHVLHQH +VGPAAKALLLSTYAKLANLYPECRELV PVFERFSSSQNLELQQR+CEYL LPE GIDVMEEVLKEMP+FPE RESGPEARLRRRLEEQE GAEEGLR + + G D D Sbjct: 524 QDEMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPVFERFSSSQNLELQQRSCEYLGLPEMGIDVMEEVLKEMPSFPEDRESGPEARLRRRLEEQELGAEEGLRVSGAGGVDND 650
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: D7FKE1_ECTSI (AP-1 complex subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE1_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.180e-52 Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 3 Query: 15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRR 326 Q+ MSGQDQFHVLHQH +VGPAAKALLLSTYAKLANLYPECRELV PVFERFSSSQNLELQQR+CEYL LPE GIDVMEEVLKEMP+FPE RESGPEARLRRR Sbjct: 520 QDKMSGQDQFHVLHQHFMEVGPAAKALLLSTYAKLANLYPECRELVTPVFERFSSSQNLELQQRSCEYLGLPEMGIDVMEEVLKEMPSFPEDRESGPEARLRRR 623
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A836C8G3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G3_9STRA) HSP 1 Score: 163 bits (413), Expect = 2.650e-44 Identity = 80/112 (71.43%), Postives = 93/112 (83.04%), Query Frame = 3 Query: 15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGA 350 QEGM G QF LHQH D P +ALLLSTYAKLANLYPECR LV PVFE++++S NLELQQR+CEY+ LP+ G++VMEEVLKEMP FPE+RESGPEARLR RLE+ E+GA Sbjct: 546 QEGMGGDAQFAALHQHFADASPGTRALLLSTYAKLANLYPECRALVTPVFEKYAASNNLELQQRSCEYMALPKVGLEVMEEVLKEMPPFPENRESGPEARLRERLEKAEQGA 657
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S3Y381_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y381_HETAK) HSP 1 Score: 113 bits (282), Expect = 7.830e-29 Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAA---KALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQEKGAEEGLRANAS 377 GMSG++Q VL QH + P+A KALLLSTYAKLANLY ECR + F R S +LELQQRA EYL LP+ G +V+E+VL+EMP FPE R S E RLRR ++ K AE+ NA+ Sbjct: 11 GMSGEEQLQVLQQHFEVLEPSASGTKALLLSTYAKLANLYEECRPAADAAFRRLRRSTDLELQQRAAEYLGLPQQGPEVVEDVLREMPPFPEGRASALEERLRR---QERKKAEDPFATNAN 129
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: W7TFV9_9STRA (AP-2 complex subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFV9_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.160e-26 Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 15 QEGMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARLRRRLEEQE 341 Q G G+ Q VL +H P KALLLSTYAKL NLYPE R LV P FE+++ S LELQQRACEY L G D+++ VL+EMPA+PE +ES EARLR++ E E Sbjct: 572 QPGRGGEVQVRVLQKHFAGTTPRTKALLLSTYAKLENLYPEVRPLVLPTFEKYTPSTELELQQRACEYASLVSQGDDILDGVLQEMPAWPEDKESALEARLRKKQEASE 680
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2D3G0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3G0_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.560e-25 Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPETGIDVMEEVLKEMPAFPESRESGPEARL 317 G SG+DQF+VL QH + P + +L+ K++NLYPECRELV P+FER +S +LE QQRA EY LP G ++ME++L+EMP+F R+S E RL Sbjct: 55 GRSGEDQFNVLMQHFSNASPKTQYQMLTAIMKISNLYPECRELVTPIFERLRASGDLETQQRANEYAMLPSLGEEMMEDILREMPSFNSDRKSALEERL 153
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: K0R582_THAOC (AP-2 complex subunit alpha n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R582_THAOC) HSP 1 Score: 109 bits (273), Expect = 4.790e-25 Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARL 317 GMSG++QFHVLHQH F+VG + K++L+STYAKLANLY ECR LV PVF R +S ++E+QQR EY + E + +E++L+EMP F + R S E RL Sbjct: 541 GMSGEEQFHVLHQHWFNVGTSTKSILISTYAKLANLYEECRPLVAPVFARSKNSSDVEVQQRCAEYSSMREAFSPEAVEDLLREMPPFEDKRRSALEMRL 640
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2UKM4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKM4_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.150e-23 Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARLR 320 GMSG+DQF VLHQH +A+L+STYAKLANLY ECR LV PVF R +S ++E+QQRA EY + E + +E++L+EMP F +SR+S E RLR Sbjct: 28 GMSGEDQFRVLHQHWATADMKTRAILISTYAKLANLYEECRPLVAPVFARCKNSVDVEIQQRAAEYSAMREAFDAETVEDLLREMPPFEDSRQSALETRLR 128
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2L0R2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L0R2_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.820e-22 Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARL 317 GMSG++QFHVLHQH ++V +++L+S+YAKLANLY ECR LV PVF + +S ++E+QQR EY + E + +E++L+EMP F + R S E RL Sbjct: 547 GMSGEEQFHVLHQHWYNVDTQTRSILISSYAKLANLYEECRPLVAPVFAKSKNSVDVEVQQRCAEYASMREAFSPEAVEDLLREMPPFEDKRRSALELRL 646
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Match: A0A7S2WLX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLX7_9STRA) HSP 1 Score: 100 bits (249), Expect = 7.870e-22 Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 3 Query: 21 GMSGQDQFHVLHQHLFDVGPAAKALLLSTYAKLANLYPECRELVNPVFERFSSSQNLELQQRACEYLELPET-GIDVMEEVLKEMPAFPESRESGPEARLR 320 GMSG++QF +LHQH + +A+L+STYAKLANLY ECR LV PVF R +S ++E+QQR+ EY + E+ + +E++L+EMP F E R+S E RL+ Sbjct: 567 GMSGEEQFRILHQHWHNCNAQTRAILVSTYAKLANLYEECRPLVAPVFTRCKNSVDVEIQQRSAEYAAMRESFSPEAVEDLLREMPPFEERRQSALELRLK 667 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100626.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100626.61.1 >prot_H-elongata_contig100626.61.1 ID=prot_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MVAVTRRACRVRTSFTSCTSICSTSARRPRPCSSAPTRSSRTSIPNAESWback to top mRNA from alignment at H-elongata_contig100626:551..2125- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100626.61.1 ID=mRNA_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1575bp|location=Sequence derived from alignment at H-elongata_contig100626:551..2125- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100626:551..2125- >mRNA_H-elongata_contig100626.61.1 ID=mRNA_H-elongata_contig100626.61.1|Name=mRNA_H-elongata_contig100626.61.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig100626:551..2125- (Himanthalia elongata Himel1 dioecious)back to top |