mRNA_H-elongata_contig100611.60.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100611.60.1
Unique NamemRNA_H-elongata_contig100611.60.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: D7FWG4_ECTSI (Aminoacyl-tRNA hydrolase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.890e-43
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            CPSALRGWEHMGQAKICVKCPTE EL+DIQ  A +AG++NYLVMDAGHTQIAAGSRTVLALGPAPVWAFE ISSHLKL
Sbjct:   84 CPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKL 161          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S0XWF5_HEMAN (Aminoacyl-tRNA hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWF5_HEMAN)

HSP 1 Score: 103 bits (256), Expect = 1.230e-26
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            P  LR WE +GQAKICV+CPTEAE+H++ + A A G+I Y V DAG TQI AGSRTVLA+GPAP  AF+ ++ H KL
Sbjct:   54 PQVLRMWEGLGQAKICVQCPTEAEMHEVADKARAKGLITYQVTDAGRTQIPAGSRTVLAIGPAPESAFKGVTDHFKL 130          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: L1JZ89_GUITC (Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZ89_GUITC)

HSP 1 Score: 102 bits (254), Expect = 1.450e-26
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:    5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            PSAL  WE  GQAKICV+CPTE E+ +I + A A G+I Y+VMDAG TQIAAGSRTVLA+GPAP   F+ ++ HLKL
Sbjct:   35 PSALTWWEKFGQAKICVQCPTEDEMWEIAKKAGAKGLITYIVMDAGRTQIAAGSRTVLAIGPAPEQQFKGLTDHLKL 111          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S3MCE7_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCE7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.390e-25
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            C +A+  WE  GQAK+ VK  TEAE+ D+Q  A+AAG++ Y V D G TQIAAGSRTVLA+GPAP +AF+ ++SHLKL
Sbjct:  109 CQTAVENWEDDGQAKVAVKVDTEAEMADLQAKAMAAGLVTYFVQDEGRTQIAAGSRTVLAIGPAPAYAFQGLTSHLKL 186          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A6T8BEQ0_9CRYP (Aminoacyl-tRNA hydrolase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T8BEQ0_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 1.070e-24
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            PSAL+ WE +GQAKIC++ PTE+E+ DI+  A   G++ Y V DAG TQIAAGSRTVLA+GPAP  +F  ++ HLKL
Sbjct:   26 PSALQTWERLGQAKICLQGPTESEMEDIESKAKGRGLVTYFVTDAGRTQIAAGSRTVLAIGPAPDSSFVGLTDHLKL 102          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A836C8I9_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.790e-24
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            P+ ++ WE++ QAKICVKCP E+E+  I+E A AAG++ Y+V DAG TQI +GSRTVL +GPAP  AF  I+ HLKL
Sbjct:  123 PNCVKSWEYLAQAKICVKCPEESEMWQIREKAEAAGLVTYMVADAGRTQIPSGSRTVLGIGPAPETAFLGITDHLKL 199          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S4VM04_9STRA (Aminoacyl-tRNA hydrolase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM04_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.490e-23
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            CP+AL+ WE  G AKI VKCP E EL  I E A + GI  YLV DAG TQIAAGSRTVL LGPAPV  FE ++ HLKL
Sbjct:  183 CPAALKAWERTGCAKIAVKCPNETELISILEKAHSKGIPCYLVEDAGRTQIAAGSRTVLGLGPAPVDVFEGVTDHLKL 260          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S1E2Y1_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2Y1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.310e-23
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            CPS L  WE  G AKI VKC +E E+ +I  AAL   +  YLV DAG TQI+AGSRTVL +GPAPV+AFE ++SHLKL
Sbjct:   98 CPSGLAAWERTGCAKIAVKCDSEQEMENIAVAALERDLPCYLVEDAGRTQISAGSRTVLGIGPAPVYAFEGLTSHLKL 175          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A8J9X121_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X121_PHATR)

HSP 1 Score: 93.6 bits (231), Expect = 4.800e-23
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            CP+A+  WE  G AKI +KCP+  ++  I   A A GI  YLV DAG TQIAAGSRTVL LGPAPV  FE +S HLKL
Sbjct:   36 CPAAVHAWEQTGCAKIALKCPSPDDMEQIAVIARAKGIPTYLVEDAGRTQIAAGSRTVLGLGPAPVSVFEGVSDHLKL 113          
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S4K0G8_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0G8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.810e-23
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235
            CP  +R WE  G AKI VKCP + E+  I  AA   GI  YLV DAG TQIAAGSRTVL LGPAPV AFE ++SHLKL
Sbjct:  117 CPDGVRAWEQTGCAKIAVKCPNQDEIEVILVAAHKRGIPLYLVADAGRTQIAAGSRTVLGLGPAPVSAFEGVTSHLKL 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG4_ECTSI2.890e-4388.46Aminoacyl-tRNA hydrolase n=2 Tax=Ectocarpus silicu... [more]
A0A7S0XWF5_HEMAN1.230e-2662.34Aminoacyl-tRNA hydrolase n=2 Tax=Hemiselmis anders... [more]
L1JZ89_GUITC1.450e-2664.94Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Guilla... [more]
A0A7S3MCE7_9STRA4.390e-2560.26Aminoacyl-tRNA hydrolase n=1 Tax=Spumella elongata... [more]
A0A6T8BEQ0_9CRYP1.070e-2459.74Aminoacyl-tRNA hydrolase n=1 Tax=Cryptomonas curva... [more]
A0A836C8I9_9STRA6.790e-2458.44Aminoacyl-tRNA hydrolase n=1 Tax=Tribonema minus T... [more]
A0A7S4VM04_9STRA2.490e-2365.38Aminoacyl-tRNA hydrolase n=3 Tax=Ditylum brightwel... [more]
A0A7S1E2Y1_9STRA4.310e-2361.54Aminoacyl-tRNA hydrolase n=1 Tax=Thalassionema nit... [more]
A0A8J9X121_PHATR4.800e-2360.26Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S4K0G8_9STRA4.810e-2364.10Aminoacyl-tRNA hydrolase n=1 Tax=Odontella aurita ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100611contigH-elongata_contig100611:1466..2377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size240
Cds size237
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100611.60.1prot_H-elongata_contig100611.60.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100611 1467..2377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.7991688-CDS-H-elongata_contig100611:1466..15731622929547.7991688-CDS-H-elongata_contig100611:1466..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 1467..1573 -
1691679064.248829-CDS-H-elongata_contig100611:1466..15731691679064.248829-CDS-H-elongata_contig100611:1466..1573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 1467..1573 -
1622929547.8100612-CDS-H-elongata_contig100611:1783..18921622929547.8100612-CDS-H-elongata_contig100611:1783..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 1784..1892 -
1691679064.2669227-CDS-H-elongata_contig100611:1783..18921691679064.2669227-CDS-H-elongata_contig100611:1783..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 1784..1892 -
1622929547.8246932-CDS-H-elongata_contig100611:2356..23771622929547.8246932-CDS-H-elongata_contig100611:2356..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 2357..2377 -
1691679064.2758863-CDS-H-elongata_contig100611:2356..23771691679064.2758863-CDS-H-elongata_contig100611:2356..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100611 2357..2377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100611.60.1

>prot_H-elongata_contig100611.60.1 ID=prot_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
LPLRPQRVGAYGPGKDLRQVPDGGRAARHTRSRSSGRHHQLSCDGRRPHA
DSGRLSHGPRAWTGSGLGLRVYLIPPEAN
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mRNA from alignment at H-elongata_contig100611:1466..2377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100611.60.1 ID=mRNA_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=912bp|location=Sequence derived from alignment at H-elongata_contig100611:1466..2377- (Himanthalia elongata Himel1 dioecious)
CTGCCCCTCCGCCCTCAGAGGGTAAGCGCATTATACCCCCCCCCCGGGAG AACGCCGCTTTGCAGCTTGCAACGGTCGTCAGTCGCGCACCCGACGGGTA TTCATAACCGTTGGGCTCGAAGCACGGCAGATCGAAACATGGGAGAGAGA CAAATCGAGAGTCCTCTTGGGATTATATATATATATATATATATATATAT TAAAAAAAGATAACAAACACGTTGTTTTTCGAGGTTCGTGACTGCAAGCG ACGGTTCGACAGGCGGCGAGTTGACGCCGCATCCGCCTTCTGCATGTGTT CCCTGGGCCGGGTCGACGGATTCGCCCCGACCACGCGCCAATAGCCGCGA CACGCGAGATTGAAAACGAGCCAGGATGAGGGTGGTAGCGCAGACGGCGT TGCCCCCTCGTTGATTCTCGTCCACGTTCATTACATTACCCTTCTCATGA TATATTATATTTTGTCGGTAACCCGCGGATGGCAGGTGGGAGCATATGGG CCAGGCAAAGATCTGCGTCAAGTGCCCGACGGAGGCCGAGCTGCACGACA TACAAGAAGCCGCTCTAGCGGCAGGCATCATCAATTATCTTGTGGTGATT TTTTTTTCTTTCTCTCTCTCTTTCTTTCTTTCATGACGTCATATTGGTAC ATCATGACGTCATACTGTAAGTCACCGTTCGAGTAGTCATATTACGGTCC GCATGCACGCTTCCCGCAGTTTTCTCTCCTCTCCCGCGGTTTTCGCTCTC CCCCACCCGTGTCTCAATATTGTAATTGACACATATATTCACCTCTTGTC GCAGATGGACGCCGGCCACACGCAGATAGCGGCAGGCTCTCGCACGGTCC TCGCGCTTGGACCGGCTCCGGTTTGGGCCTTCGAGTATATCTCATCCCAC CTGAAGCTAATG
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Coding sequence (CDS) from alignment at H-elongata_contig100611:1466..2377-

>mRNA_H-elongata_contig100611.60.1 ID=mRNA_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig100611:1466..2377- (Himanthalia elongata Himel1 dioecious)
CTGCCCCTCCGCCCTCAGAGGCTGCCCCTCCGCCCTCAGAGGGTGGGAGC
ATATGGGCCAGGCAAAGATCTGCGTCAAGTGCCCGACGGAGGCCGAGCTG
CACGACATACAAGAAGCCGCTCTAGCGGCAGGCATCATCAATTATCTTGT
GGTGGGAGCATATGGGCCAGGCAAAGATCTGCGTCAAGTGCCCGACGGAG
GCCGAGCTGCACGACATACAAGAAGCCGCTCTAGCGGCAGGCATCATCAA
TTATCTTGTGATGGACGCCGGCCACACGCAGATAGCGGCAGGCTCTCGCA
CGGTCCTCGCGCTTGGACCGGCTCCGGTTTGGGCCTTCGAGTATATCTCA
TCCCACCTGAAGCTAATATGGACGCCGGCCACACGCAGATAGCGGCAGGC
TCTCGCACGGTCCTCGCGCTTGGACCGGCTCCGGTTTGGGCCTTCGAGTA
TATCTCATCCCACCTGAAGCTAAT
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