mRNA_H-elongata_contig100611.60.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: D7FWG4_ECTSI (Aminoacyl-tRNA hydrolase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG4_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.890e-43 Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 CPSALRGWEHMGQAKICVKCPTE EL+DIQ A +AG++NYLVMDAGHTQIAAGSRTVLALGPAPVWAFE ISSHLKL Sbjct: 84 CPSALRGWEHMGQAKICVKCPTETELYDIQAKAQSAGLVNYLVMDAGHTQIAAGSRTVLALGPAPVWAFEGISSHLKL 161
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S0XWF5_HEMAN (Aminoacyl-tRNA hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWF5_HEMAN) HSP 1 Score: 103 bits (256), Expect = 1.230e-26 Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 P LR WE +GQAKICV+CPTEAE+H++ + A A G+I Y V DAG TQI AGSRTVLA+GPAP AF+ ++ H KL Sbjct: 54 PQVLRMWEGLGQAKICVQCPTEAEMHEVADKARAKGLITYQVTDAGRTQIPAGSRTVLAIGPAPESAFKGVTDHFKL 130
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: L1JZ89_GUITC (Aminoacyl-tRNA hydrolase (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZ89_GUITC) HSP 1 Score: 102 bits (254), Expect = 1.450e-26 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2 Query: 5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 PSAL WE GQAKICV+CPTE E+ +I + A A G+I Y+VMDAG TQIAAGSRTVLA+GPAP F+ ++ HLKL Sbjct: 35 PSALTWWEKFGQAKICVQCPTEDEMWEIAKKAGAKGLITYIVMDAGRTQIAAGSRTVLAIGPAPEQQFKGLTDHLKL 111
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S3MCE7_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCE7_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.390e-25 Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 C +A+ WE GQAK+ VK TEAE+ D+Q A+AAG++ Y V D G TQIAAGSRTVLA+GPAP +AF+ ++SHLKL Sbjct: 109 CQTAVENWEDDGQAKVAVKVDTEAEMADLQAKAMAAGLVTYFVQDEGRTQIAAGSRTVLAIGPAPAYAFQGLTSHLKL 186
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A6T8BEQ0_9CRYP (Aminoacyl-tRNA hydrolase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T8BEQ0_9CRYP) HSP 1 Score: 97.4 bits (241), Expect = 1.070e-24 Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 PSAL+ WE +GQAKIC++ PTE+E+ DI+ A G++ Y V DAG TQIAAGSRTVLA+GPAP +F ++ HLKL Sbjct: 26 PSALQTWERLGQAKICLQGPTESEMEDIESKAKGRGLVTYFVTDAGRTQIAAGSRTVLAIGPAPDSSFVGLTDHLKL 102
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A836C8I9_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I9_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.790e-24 Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 5 PSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 P+ ++ WE++ QAKICVKCP E+E+ I+E A AAG++ Y+V DAG TQI +GSRTVL +GPAP AF I+ HLKL Sbjct: 123 PNCVKSWEYLAQAKICVKCPEESEMWQIREKAEAAGLVTYMVADAGRTQIPSGSRTVLGIGPAPETAFLGITDHLKL 199
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S4VM04_9STRA (Aminoacyl-tRNA hydrolase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM04_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.490e-23 Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 CP+AL+ WE G AKI VKCP E EL I E A + GI YLV DAG TQIAAGSRTVL LGPAPV FE ++ HLKL Sbjct: 183 CPAALKAWERTGCAKIAVKCPNETELISILEKAHSKGIPCYLVEDAGRTQIAAGSRTVLGLGPAPVDVFEGVTDHLKL 260
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S1E2Y1_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2Y1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.310e-23 Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 CPS L WE G AKI VKC +E E+ +I AAL + YLV DAG TQI+AGSRTVL +GPAPV+AFE ++SHLKL Sbjct: 98 CPSGLAAWERTGCAKIAVKCDSEQEMENIAVAALERDLPCYLVEDAGRTQISAGSRTVLGIGPAPVYAFEGLTSHLKL 175
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A8J9X121_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X121_PHATR) HSP 1 Score: 93.6 bits (231), Expect = 4.800e-23 Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 CP+A+ WE G AKI +KCP+ ++ I A A GI YLV DAG TQIAAGSRTVL LGPAPV FE +S HLKL Sbjct: 36 CPAAVHAWEQTGCAKIALKCPSPDDMEQIAVIARAKGIPTYLVEDAGRTQIAAGSRTVLGLGPAPVSVFEGVSDHLKL 113
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Match: A0A7S4K0G8_9STRA (Aminoacyl-tRNA hydrolase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0G8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.810e-23 Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 2 CPSALRGWEHMGQAKICVKCPTEAELHDIQEAALAAGIINYLVMDAGHTQIAAGSRTVLALGPAPVWAFEYISSHLKL 235 CP +R WE G AKI VKCP + E+ I AA GI YLV DAG TQIAAGSRTVL LGPAPV AFE ++SHLKL Sbjct: 117 CPDGVRAWEQTGCAKIAVKCPNQDEIEVILVAAHKRGIPLYLVADAGRTQIAAGSRTVLGLGPAPVSAFEGVTSHLKL 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100611.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100611.60.1 >prot_H-elongata_contig100611.60.1 ID=prot_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp LPLRPQRVGAYGPGKDLRQVPDGGRAARHTRSRSSGRHHQLSCDGRRPHAback to top mRNA from alignment at H-elongata_contig100611:1466..2377- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100611.60.1 ID=mRNA_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=912bp|location=Sequence derived from alignment at H-elongata_contig100611:1466..2377- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100611:1466..2377- >mRNA_H-elongata_contig100611.60.1 ID=mRNA_H-elongata_contig100611.60.1|Name=mRNA_H-elongata_contig100611.60.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig100611:1466..2377- (Himanthalia elongata Himel1 dioecious)back to top |