mRNA_H-elongata_contig100576.59.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100576.59.1
Unique NamemRNA_H-elongata_contig100576.59.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100576.59.1 vs. uniprot
Match: A0A6H5L576_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L576_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.270e-6
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  307 FRKEARGHNKDALLPYANKTAEFYLPPGVSAVIFRTSVLLAHIGRYDE 450
            F KEARG  K+AL  YA+  ++  L PG SAVIFRTSVLLA++GR DE
Sbjct:  193 FCKEARGDYKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDE 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100576.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L576_9PHAE2.270e-662.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100576contigH-elongata_contig100576:1038..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size639
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100576.59.1prot_H-elongata_contig100576.59.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100576 1038..1713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.7292328-CDS-H-elongata_contig100576:1037..13721622929547.7292328-CDS-H-elongata_contig100576:1037..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100576 1038..1372 -
1691679064.2152133-CDS-H-elongata_contig100576:1037..13721691679064.2152133-CDS-H-elongata_contig100576:1037..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100576 1038..1372 -
1622929547.7459483-CDS-H-elongata_contig100576:1619..17131622929547.7459483-CDS-H-elongata_contig100576:1619..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100576 1620..1713 -
1691679064.2230046-CDS-H-elongata_contig100576:1619..17131691679064.2230046-CDS-H-elongata_contig100576:1619..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100576 1620..1713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.76221-UTR-H-elongata_contig100576:1713..19231622929547.76221-UTR-H-elongata_contig100576:1713..1923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100576 1714..1923 -
1691679064.231367-UTR-H-elongata_contig100576:1713..19231691679064.231367-UTR-H-elongata_contig100576:1713..1923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100576 1714..1923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100576.59.1

>prot_H-elongata_contig100576.59.1 ID=prot_H-elongata_contig100576.59.1|Name=mRNA_H-elongata_contig100576.59.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MTDLLLPGTAFLEEALSAPENLDDLVNRTQVGFRKEARGHNKDALLPYAN
KTAEFYLPPGVSAVIFRTSVLLAHIGRYDEVRLVDIGLWTRVELEALGRA
LGSNLRWLKSCFVRVSSRGAYLRISDDKSKGKGVYMSVPTGY*
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mRNA from alignment at H-elongata_contig100576:1038..1923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100576.59.1 ID=mRNA_H-elongata_contig100576.59.1|Name=mRNA_H-elongata_contig100576.59.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig100576:1038..1923- (Himanthalia elongata Himel1 dioecious)
CAGGAGCTCCTGCGTCAACCTGGGGTCAAAAAGAAACTGTTAGCCGAACC
GACTACCCGAAACACGGCGTGTTGCCATACTGTCCTTCCTTGGAAACGCT
TATAACAAACTATGGCGCGTGCGGTGGAAACGGCCCCGTGGTGGTGACAA
GAATCGTGAAAACAGGACGGATGCTGAAGACTCGAGTGCAGGCCCGACGA
TTCGGTGAAAATGACCGATCTCCTTTTACCAGGCACAGCGTTCCTCGAAG
AGGCTTTGTCTGCACCCGAGAATTTGGATGACCTCGTCAATCGCACCCAA
GTCGGTAAGCGCTATATAGCCGCCCTGTTTGCGGATCTATCAACCAATAA
GTCTACTGTCCGTTCCAGACGAGCCGTTCGATGAAAACATGTTTTATTCA
CGGCGCTTCGCGTGGAATATGTCAAAAGTTGATGACGATGTCAGTGTCAA
GGGGAAGTTATTACTTTTACCTCTACGCGATCCAGGCGCTCGGTTCTCAT
AACTTTTAACGATGGATAGGTCTATGTACGCTTGACCTGTTTACTGGCTA
GGTTTCCGCAAGGAAGCAAGAGGCCACAACAAAGATGCCCTCTTACCGTA
CGCGAATAAAACCGCTGAGTTTTATCTTCCGCCGGGGGTCTCGGCGGTCA
TCTTCCGCACATCAGTACTATTGGCGCACATCGGGAGATACGACGAAGTC
AGGTTAGTCGACATTGGCCTCTGGACAAGAGTCGAGTTGGAGGCACTAGG
ACGCGCTCTAGGTTCAAATTTGCGATGGCTCAAGTCTTGCTTCGTCCGCG
TCTCATCACGTGGAGCATATCTACGAATTAGTGATGATAAAAGCAAGGGC
AAGGGTGTCTACATGTCTGTGCCAACGGGATACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig100576:1038..1923-

>mRNA_H-elongata_contig100576.59.1 ID=mRNA_H-elongata_contig100576.59.1|Name=mRNA_H-elongata_contig100576.59.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig100576:1038..1923- (Himanthalia elongata Himel1 dioecious)
ATGACCGATCTCCTTTTACCAGGCACAGCGTTCCTCGAAGAGGCTTTGTC
TGCACCCGAGAATTTGGATGACCTCGTCAATCGCACCCAAGTCGATGACC
GATCTCCTTTTACCAGGCACAGCGTTCCTCGAAGAGGCTTTGTCTGCACC
CGAGAATTTGGATGACCTCGTCAATCGCACCCAAGTCGGTTTCCGCAAGG
AAGCAAGAGGCCACAACAAAGATGCCCTCTTACCGTACGCGAATAAAACC
GCTGAGTTTTATCTTCCGCCGGGGGTCTCGGCGGTCATCTTCCGCACATC
AGTACTATTGGCGCACATCGGGAGATACGACGAAGTCAGGTTAGTCGACA
TTGGCCTCTGGACAAGAGTCGAGTTGGAGGCACTAGGACGCGCTCTAGGT
TCAAATTTGCGATGGCTCAAGTCTTGCTTCGTCCGCGTCTCATCACGTGG
AGCATATCTACGAATTAGTGATGATAAAAGCAAGGGCAAGGGTGTCTACA
TGTCTGTGCCAACGGGATACTGAGTTTCCGCAAGGAAGCAAGAGGCCACA
ACAAAGATGCCCTCTTACCGTACGCGAATAAAACCGCTGAGTTTTATCTT
CCGCCGGGGGTCTCGGCGGTCATCTTCCGCACATCAGTACTATTGGCGCA
CATCGGGAGATACGACGAAGTCAGGTTAGTCGACATTGGCCTCTGGACAA
GAGTCGAGTTGGAGGCACTAGGACGCGCTCTAGGTTCAAATTTGCGATGG
CTCAAGTCTTGCTTCGTCCGCGTCTCATCACGTGGAGCATATCTACGAAT
TAGTGATGATAAAAGCAAGGGCAAGGGTGTCTACATGTCTGTGCCAACGG
GATACTGA
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