mRNA_H-elongata_contig100544.58.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100544.58.1
Unique NamemRNA_H-elongata_contig100544.58.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: D8LCA9_ECTSI (Abhydrolase domain containing 14B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA9_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.960e-51
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDSMGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLKYDV 357
            +C+ LGM   +PAVIVSPSMSGSFSVPLLL KP+LFAGYVPVAPG A  ++AE+FAAVTGVPALIVYGE D MG+R S  LS+IPGS ++M+ GA HP Y+DEPD+FHE LL FL  D 
Sbjct:  124 ICSGLGMGVDSPAVIVSPSMSGSFSVPLLLSKPELFAGYVPVAPGQALSYTAEDFAAVTGVPALIVYGELDRMGSRASSLLSSIPGSRVLMVPGASHPCYIDEPDMFHESLLSFLNEDA 242          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A7R9BXC4_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BXC4_9CRUS)

HSP 1 Score: 117 bits (293), Expect = 4.920e-29
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   34 PAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDSMGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            PAV+VSPSMSG+FS+ LL  KP++FAG+VPVAP +  +   +E+     VP L++YG++D  G RVS+KL  IP S ++MI  A HPAY+D+PD+FHE +  FL+
Sbjct:  242 PAVVVSPSMSGTFSLSLLRSKPEMFAGFVPVAP-VMSDELTQEYLGSLRVPTLVLYGDRDQHGKRVSEKLGKIPTSRVVMIEEASHPAYIDQPDVFHELMYNFLR 345          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A7R9GFX7_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GFX7_9CRUS)

HSP 1 Score: 117 bits (293), Expect = 4.310e-28
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   34 PAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDSMGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            PAV+VSPSMSG+FS+ LL  KP++FAG+VPVAP +  +   +E+     VP L++YG++D  G RVS+KL  IP S ++MI  A HPAY+D+PD+FHE +  FL+
Sbjct:  660 PAVVVSPSMSGTFSLSLLRSKPEMFAGFVPVAP-VMSDELTQEYLGSLRVPTLVLYGDRDQHGKRVSEKLGKIPTSRVVMIEEASHPAYIDQPDVFHELMYNFLR 763          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A6P7MGH3_BETSP (protein ABHD14B isoform X1 n=3 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MGH3_BETSP)

HSP 1 Score: 102 bits (254), Expect = 2.340e-24
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDSMGTRVS-KKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            +C  LG+S   P V+VSPS+SG +S+P L++   L  GYVPVAP      + E++A+V  VPALIVYG++D+    VS + LS +P   ++++ GAGHP YLD+PD +H  +L+FL+
Sbjct:  127 VCEELGLS---PVVVVSPSLSGMYSLPFLMQHQALVRGYVPVAPICTDRFTPEQYASVK-VPALIVYGDQDTQLGEVSLRNLSNLPRHRVVVMRGAGHPCYLDDPDAWHAAVLDFLQ 239          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: UPI000A1C2C46 (protein ABHD14B n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C2C46)

HSP 1 Score: 101 bits (252), Expect = 2.370e-24
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDS-MGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            +C +LG++   P VI+SPS+SGS S+P L+  P +   Y+PVAP    + +AE++ +V  VP LIVYGE+D  +G  V K L  +    +++I  AGHP YLD PD++H+ LL+F+ 
Sbjct:   97 LCESLGLA---PVVIISPSLSGSHSLPFLIEHPSMVRAYIPVAPICTEKFTAEQYQSVK-VPTLIVYGERDMILGKEVVKNLKNLTNHKVVVIKDAGHPCYLDHPDIWHKELLDFIS 209          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A2G8KXK4_STIJA (Putative alpha/beta hydrolase domain-containing protein 14B n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KXK4_STIJA)

HSP 1 Score: 101 bits (252), Expect = 2.990e-24
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   10 ALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDS-MGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            ALG+ +  P +I+SPSMSG FS+PLL   P+ F GY+PVAP     H+ +E++AV  +P  IVYGE D  +G    + LS IP   + ++ GAGH AY++ P  FH+ LL F +
Sbjct:  106 ALGLKDT-PVIIISPSMSGGFSIPLLFSNPEAFKGYLPVAPVNTASHTHKEYSAVK-IPTCIVYGENDKGLGVASFRDLSNIPNKQVHVLSGAGHAAYMNSPGEFHQILLNFSE 217          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A2I4D278_9TELE (alpha/beta hydrolase domain-containing protein 14B n=3 Tax=Rivulidae TaxID=28771 RepID=A0A2I4D278_9TELE)

HSP 1 Score: 101 bits (251), Expect = 3.350e-24
Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDSMGTRVS-KKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            +C  L ++   P V+VSPS+SG +S+P L++ P L  GYVPVAP    + +AE++ +V  VPALIVYG++D+    VS + LS++    ++++ GAGHP YLD+PD +H+ L +FL 
Sbjct:   97 VCEQLSLT---PVVVVSPSLSGMYSLPFLMQHPSLIRGYVPVAPICTEKFTAEQYQSVK-VPALIVYGDQDAQLGEVSLRNLSSLSNHKVVVMKGAGHPCYLDDPDTWHKALTDFLS 209          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: A0A3Q3GI42_9LABR (Abhydrolase domain containing 14B n=3 Tax=Labridae TaxID=8247 RepID=A0A3Q3GI42_9LABR)

HSP 1 Score: 100 bits (250), Expect = 4.730e-24
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDS-MGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            +C+ L +S   P V++SPS+SG +S+P L++  DL  GYVPVAP    + +AE++ +V  VP+LIVYG++D+ +G    + LS++    ++M+ GAGHP YLD+PD +H+ L +F+ 
Sbjct:   97 VCDQLNLS---PVVVISPSLSGMYSLPFLMQHQDLIRGYVPVAPICTDKFTAEQYQSVK-VPSLIVYGDQDAQLGELSLRNLSSLANHSVVMMKGAGHPCYLDDPDTWHKALTDFVN 209          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: UPI001E1E13FB (protein ABHD14A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13FB)

HSP 1 Score: 97.8 bits (242), Expect = 1.320e-23
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   25 EANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDS-MGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFLK 348
            + N  VIVSPSMSG FS+P L + P    G+VPVAP   G+ + E++  +  +P L++YGEKD  +G    K L  +P   ++ + GAGHP Y+D P+ FHE  ++FLK
Sbjct:   31 KLNKPVIVSPSMSGGFSLPYLFKYPGSVRGFVPVAPVGTGDFTPEDYKKLK-IPTLVIYGEKDKRLGVDSKKNLENLPVRTIVEVPGAGHPCYIDNPEFFHEFFIKFLK 138          
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Match: UPI001FB83976 (protein ABHD14B n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB83976)

HSP 1 Score: 99.8 bits (247), Expect = 1.330e-23
Identity = 52/116 (44.83%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEHSAEEFAAVTGVPALIVYGEKDS-MGTRVSKKLSAIPGSHLMMIGGAGHPAYLDEPDLFHERLLEFL 345
            +C  L +S   P V++SPS+SG +S+P LL+   L   YVPVAP    + +AE++ +V  VPALIVYG++D+ MG    + LS +P   ++++ GAGHP YLD+PD +H+ L +FL
Sbjct:   97 VCEQLSLS---PVVVISPSLSGMYSLPFLLQHQALIKAYVPVAPICTEKFTAEQYGSVK-VPALIVYGDQDTQMGEASLRNLSNLPAHSVVVMKGAGHPCYLDDPDTWHKALTDFL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100544.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA9_ECTSI6.960e-5169.75Abhydrolase domain containing 14B n=2 Tax=Ectocarp... [more]
A0A7R9BXC4_9CRUS4.920e-2952.38Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A7R9GFX7_9CRUS4.310e-2852.38Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A6P7MGH3_BETSP2.340e-2446.15protein ABHD14B isoform X1 n=3 Tax=Betta splendens... [more]
UPI000A1C2C462.370e-2443.59protein ABHD14B n=1 Tax=Boleophthalmus pectinirost... [more]
A0A2G8KXK4_STIJA2.990e-2445.61Putative alpha/beta hydrolase domain-containing pr... [more]
A0A2I4D278_9TELE3.350e-2444.44alpha/beta hydrolase domain-containing protein 14B... [more]
A0A3Q3GI42_9LABR4.730e-2442.74Abhydrolase domain containing 14B n=3 Tax=Labridae... [more]
UPI001E1E13FB1.320e-2344.04protein ABHD14A-like n=1 Tax=Mercenaria mercenaria... [more]
UPI001FB839761.330e-2344.83protein ABHD14B n=1 Tax=Mugil cephalus TaxID=48193... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100544contigH-elongata_contig100544:699..1073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D8LCA9
KEGG koko:K13706
EggNOG free text desc.positive regulation of transcription by RNA polymerase II
EggNOG OGs2QR0B@2759,COG0596@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.6808517-CDS-H-elongata_contig100544:698..10731622929547.6808517-CDS-H-elongata_contig100544:698..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100544 699..1073 +
1691679064.1981213-CDS-H-elongata_contig100544:698..10731691679064.1981213-CDS-H-elongata_contig100544:698..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100544 699..1073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100544.58.1prot_H-elongata_contig100544.58.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100544 699..1073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100544.58.1

>prot_H-elongata_contig100544.58.1 ID=prot_H-elongata_contig100544.58.1|Name=mRNA_H-elongata_contig100544.58.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MCNALGMSEANPAVIVSPSMSGSFSVPLLLRKPDLFAGYVPVAPGIAGEH
SAEEFAAVTGVPALIVYGEKDSMGTRVSKKLSAIPGSHLMMIGGAGHPAY
LDEPDLFHERLLEFLKYDVFHGEG*
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mRNA from alignment at H-elongata_contig100544:699..1073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100544.58.1 ID=mRNA_H-elongata_contig100544.58.1|Name=mRNA_H-elongata_contig100544.58.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig100544:699..1073+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAACGCGCTCGGCATGTCGGAGGCGAACCCGGCCGTGATCGTGTC TCCGTCTATGAGCGGGTCGTTCTCCGTCCCGCTGCTCTTGCGGAAGCCCG ACCTGTTCGCCGGGTACGTTCCGGTTGCACCTGGCATCGCTGGAGAGCAC TCGGCCGAGGAATTCGCGGCGGTCACTGGAGTTCCTGCGCTCATCGTCTA CGGCGAGAAGGACTCGATGGGAACCCGGGTTTCTAAGAAACTCTCCGCAA TTCCAGGGTCGCACTTGATGATGATCGGAGGTGCTGGTCACCCCGCGTAC CTCGATGAACCAGACCTGTTTCACGAGCGCCTCTTGGAGTTCCTAAAATA TGACGTTTTCCATGGAGAGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig100544:699..1073+

>mRNA_H-elongata_contig100544.58.1 ID=mRNA_H-elongata_contig100544.58.1|Name=mRNA_H-elongata_contig100544.58.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig100544:699..1073+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAACGCGCTCGGCATGTCGGAGGCGAACCCGGCCGTGATCGTGTC
TCCGTCTATGAGCGGGTCGTTCTCCGTCCCGCTGCTCTTGCGGAAGCCCG
ACCTGTTCGCCGGGTACGTTCCGGTTGCACCTGGCATCGCTGGAGAGCAC
TCGGCCGAGGAATTCGCGGCGGTCACTGGAGTTCCTGCGCTCATCGTCTA
CGGCGAGAAGGACTCGATGGGAACCCGGGTTTCTAAGAAACTCTCCGCAA
TTCCAGGGTCGCACTTGATGATGATCGGAGGTGCTGGTCACCCCGCGTAC
CTCGATGAACCAGACCTGTTTCACGAGCGCCTCTTGGAGTTCCTAAAATA
TGACGTTTTCCATGGAGAGGGGTAGATGTGCAACGCGCTCGGCATGTCGG
AGGCGAACCCGGCCGTGATCGTGTCTCCGTCTATGAGCGGGTCGTTCTCC
GTCCCGCTGCTCTTGCGGAAGCCCGACCTGTTCGCCGGGTACGTTCCGGT
TGCACCTGGCATCGCTGGAGAGCACTCGGCCGAGGAATTCGCGGCGGTCA
CTGGAGTTCCTGCGCTCATCGTCTACGGCGAGAAGGACTCGATGGGAACC
CGGGTTTCTAAGAAACTCTCCGCAATTCCAGGGTCGCACTTGATGATGAT
CGGAGGTGCTGGTCACCCCGCGTACCTCGATGAACCAGACCTGTTTCACG
AGCGCCTCTTGGAGTTCCTAAAATATGACGTTTTCCATGGAGAGGGGTAG
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