mRNA_H-elongata_contig100542.57.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100542.57.1
Unique NamemRNA_H-elongata_contig100542.57.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100542.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100542contigH-elongata_contig100542:1749..2281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100542.57.1prot_H-elongata_contig100542.57.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100542 1835..2185 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.600863-UTR-H-elongata_contig100542:1748..18341622929547.600863-UTR-H-elongata_contig100542:1748..1834Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100542 1749..1834 +
1691679064.1553378-UTR-H-elongata_contig100542:1748..18341691679064.1553378-UTR-H-elongata_contig100542:1748..1834Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100542 1749..1834 +
1622929547.638854-UTR-H-elongata_contig100542:2185..22811622929547.638854-UTR-H-elongata_contig100542:2185..2281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100542 2186..2281 +
1691679064.177858-UTR-H-elongata_contig100542:2185..22811691679064.177858-UTR-H-elongata_contig100542:2185..2281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100542 2186..2281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.6232047-CDS-H-elongata_contig100542:1834..21851622929547.6232047-CDS-H-elongata_contig100542:1834..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100542 1835..2185 +
1691679064.1668482-CDS-H-elongata_contig100542:1834..21851691679064.1668482-CDS-H-elongata_contig100542:1834..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100542 1835..2185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100542.57.1

>prot_H-elongata_contig100542.57.1 ID=prot_H-elongata_contig100542.57.1|Name=mRNA_H-elongata_contig100542.57.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MTPSATSSMPRVVRGESSTYLSLRYVYLYSNFYVALQHPLHSRLRTLSRE
TGSADRPALAWSCSQSMLNMVRTPGILSILSFRFPRRLSSLPSNRHRANP
DFIRSCALQALCPLYP*
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mRNA from alignment at H-elongata_contig100542:1749..2281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100542.57.1 ID=mRNA_H-elongata_contig100542.57.1|Name=mRNA_H-elongata_contig100542.57.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at H-elongata_contig100542:1749..2281+ (Himanthalia elongata Himel1 dioecious)
GAAAGGCTGAGAGGCTAACATGAAAACTATGAACTAATTTCAACGTGGCA
GGTTACGATGGGGCCATTCAACCTGCTAGGTTCCCTATGACACCTAGTGC
AACCTCGTCCATGCCGCGTGTGGTCCGAGGGGAATCATCTACCTATCTCT
CACTGCGTTACGTTTACTTGTACTCTAATTTTTATGTTGCCCTCCAACAC
CCTCTTCATTCGCGCCTGAGAACTTTGTCTCGCGAGACGGGTTCGGCAGA
TCGTCCCGCGTTAGCCTGGTCATGTTCTCAATCCATGCTGAATATGGTGC
GTACTCCCGGGATCCTCTCGATCCTCTCGTTTCGTTTTCCGCGTCGACTT
TCATCTCTGCCGTCAAACCGCCATCGGGCCAATCCCGATTTTATCAGATC
ATGTGCTCTGCAAGCCTTATGCCCGCTCTACCCATAGTGGGTGTGGGAAA
ATAGAGGCGTACAATAATTGGTCAATGAGGTTACCTGAATAGGTTTCACC
CGTTACTCGAGCTACCTTGTTGATGTTGGTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig100542:1749..2281+

>mRNA_H-elongata_contig100542.57.1 ID=mRNA_H-elongata_contig100542.57.1|Name=mRNA_H-elongata_contig100542.57.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig100542:1749..2281+ (Himanthalia elongata Himel1 dioecious)
ATGACACCTAGTGCAACCTCGTCCATGCCGCGTGTGGTCCGAGGGGAATC
ATCTACCTATCTCTCACTGCGTTACGTTTACTTGTACTCTAATTTTTATG
TTGCCCTCCAACACCCTCTTCATTCGCGCCTGAGAACTTTGTCTCGCGAG
ACGGGTTCGGCAGATCGTCCCGCGTTAGCCTGGTCATGTTCTCAATCCAT
GCTGAATATGGTGCGTACTCCCGGGATCCTCTCGATCCTCTCGTTTCGTT
TTCCGCGTCGACTTTCATCTCTGCCGTCAAACCGCCATCGGGCCAATCCC
GATTTTATCAGATCATGTGCTCTGCAAGCCTTATGCCCGCTCTACCCATA
GATGACACCTAGTGCAACCTCGTCCATGCCGCGTGTGGTCCGAGGGGAAT
CATCTACCTATCTCTCACTGCGTTACGTTTACTTGTACTCTAATTTTTAT
GTTGCCCTCCAACACCCTCTTCATTCGCGCCTGAGAACTTTGTCTCGCGA
GACGGGTTCGGCAGATCGTCCCGCGTTAGCCTGGTCATGTTCTCAATCCA
TGCTGAATATGGTGCGTACTCCCGGGATCCTCTCGATCCTCTCGTTTCGT
TTTCCGCGTCGACTTTCATCTCTGCCGTCAAACCGCCATCGGGCCAATCC
CGATTTTATCAGATCATGTGCTCTGCAAGCCTTATGCCCGCTCTACCCAT
AG
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