mRNA_H-elongata_contig10053.56.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: D8LQD6_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD6_ECTSI) HSP 1 Score: 277 bits (708), Expect = 7.940e-80 Identity = 159/333 (47.75%), Postives = 198/333 (59.46%), Query Frame = 2
Query: 926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTT---------------QSPTPKMQEPTQGLDIANAAVGVPEVEL-------------ECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822
++DLLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA VQE+ P G P VD + KH + ++ + TP+ + + G C RH+F+ L QAP F+T+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATPST +AL+A R VE E GFRGYAESL++DVL +C D RKL CAFQDAW ML AAGR L PS + F ++ ++KAA+ELGKVEKR+GYFL WA + GE +P M
Sbjct: 218 MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFATPPSGAPXXXXXXRPSTPEQXXXXXXSEFPASRSGXXXXXXXXXXXXXXXXXXXSCTRHSFAALLSQAFQAPGFTTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPSTAGEALAACVERAVEGERCGFRGYAESLQQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 535
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A6H5KU08_9PHAE (HIT-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU08_9PHAE) HSP 1 Score: 273 bits (697), Expect = 1.190e-76 Identity = 159/332 (47.89%), Postives = 193/332 (58.13%), Query Frame = 2
Query: 926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTTQSPTPKMQEP---------------------------TQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822
I+ LLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA VQE+ P G P VD + KH + ++ TP P C RH+F+ L QAP FST+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATP+T +AL+A R +E E GFRGYAESLR+DVL +C D RKL CAFQDAW ML AAGR L PS + F ++ ++KAA+ELGKVEKR+GYFL WA + GE +P M
Sbjct: 381 ILGLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFG-TPSSGAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRHSFAALLSQAFQAPGFSTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPATAGEALAACVERALEGERSGFRGYAESLRQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 696
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A835ZEE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE4_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.740e-13 Identity = 82/299 (27.42%), Postives = 118/299 (39.46%), Query Frame = 2
Query: 920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACR--VQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTL---SHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLR----EDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789
E ++ L++EER+ F+R + SG L R + W PWW + VQE+PP + P Q+P +G V + + C RH + L +H++ + L S SP LP L DV +Y RLYNGCWC DP+ A+ ++ S VL A ++V A+ + R G+ +G A L +D L L A D ++ AA EPG K K L V KR+ YF +WA
Sbjct: 86 ELSLEHLSKEERAAFMRAVQSGVLTRYVQVWEPWWESPAKLLVQELPPTTSAAQP--------------------------QQPAEGT------YAVVDTDTTCSRHAAAQLLQAAHISLASDGLR-LTSPAASPLLPHLVLDVLCSYAALMRLYNGCWCCDPLQAAADMLQLSAVLSKDARHASVALAMESCHLRQQALTGIA-KGNATQLSIRALKDALSLLSTQVVTQTALLDLMALFAAA---------LQEPGAKK--------------------KKTLALVAKRLEYFAAWA 321
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A0A0KV24_CUCSA (HIT-type domain-containing protein n=2 Tax=Cucumis TaxID=3655 RepID=A0A0A0KV24_CUCSA) HSP 1 Score: 80.1 bits (196), Expect = 3.990e-12 Identity = 77/254 (30.31%), Postives = 110/254 (43.31%), Query Frame = 2
Query: 887 EEQNQPLGVDDERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQ-ACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDV-LVLCRDHRKLFCAFQDAWSMLNAAGRAL 1636
EE + + D+ D L+EEE+ RFLR +ASG L ++I PW WW + + R + E G+P V L + + + T+++ E Q I A P+ L P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV +L L C D ++ A R L
Sbjct: 107 EETTEKVLAGDQLSFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMKPSARTISLSKE---GTPL---VQLHAAERMTTSLTSET------EVMQSSGIPQA----PDTPL-----------------PPLSKLSTAEPSPLLAVHLIDIIYSYCFTLRLYNGDWQSDATGSALVVLSISSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVSTLLSLGCPALVCLLCDLQRLIQAGERDL 327
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A5A7SW59_CUCME (Aquarius n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SW59_CUCME) HSP 1 Score: 80.1 bits (196), Expect = 1.580e-11 Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2
Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636
D+ D L+EEE+ RFLR +ASG L ++I PW WW + P S SK +P +M A + G+P + P P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV L L C D ++ A R L
Sbjct: 1739 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 1949
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: E5GCK6_CUCME (Aquarius n=1 Tax=Cucumis melo subsp. melo TaxID=412675 RepID=E5GCK6_CUCME) HSP 1 Score: 80.1 bits (196), Expect = 1.610e-11 Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2
Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636
D+ D L+EEE+ RFLR +ASG L ++I PW WW + P S SK +P +M A + G+P + P P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV L L C D ++ A R L
Sbjct: 1952 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 2162
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: T0Q3L4_SAPDV (HIT-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3L4_SAPDV) HSP 1 Score: 72.4 bits (176), Expect = 1.060e-9 Identity = 56/184 (30.43%), Postives = 81/184 (44.02%), Query Frame = 2
Query: 929 MDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480
+D LT ER++FLRE+A GRLG+LIA W PWWT + P ++ + +++H Q T D + G EV + P+H +T S L + P SP L ++ +AY +T R YNG W D AS L+ S VL T++ +A
Sbjct: 146 LDALTPNERAQFLREVADGRLGKLIALWTPWWTTS-------PAAYAAATH--------SARH-------------QLITAVDDDEDDIDGDVEVPPQHPKHILTT--RRAKALEPISALHASPNSPVLCCNLFELLFAYAYTLRTYNGDWTADVAEASATLVALSAVLHSQRVYMTIDDVRTA 299
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A067CML1_SAPPC (HIT-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CML1_SAPPC) HSP 1 Score: 69.3 bits (168), Expect = 1.010e-8 Identity = 56/190 (29.47%), Postives = 84/190 (44.21%), Query Frame = 2
Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQA--PVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480
D +D LT +ER++FLRE+A GRLG+LIA W PWWT + P ++ + + +++H Q + + P+H L+ +A P+ S L + P P L ++ +AY +T R YNG W D + AS LI SPVL T+E +A
Sbjct: 142 DALTLDALTPDERAQFLREVADGRLGKLIALWTPWWTSS-------PAAYAAA--------TKSARH-----------------QLIVAIDDEXXXXXXXXGLPQHPKQLLTTARAKALEPI-SALHAAPNGPVLRCNLFELLFAYAYTLRDYNGDWTTDVLEASATLIALSPVLHSQRVYLTIEDVRAA 298
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A1D2A295_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A295_AUXPR) HSP 1 Score: 67.4 bits (163), Expect = 2.050e-8 Identity = 76/292 (26.03%), Postives = 109/292 (37.33%), Query Frame = 2
Query: 920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWT-QACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRK-LFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789
E + + LT E + F + S +GR++ PW+PWWT +A R + P G +V S P P GL P LS LT PPSP LP + + YAY +T R +NG D +GA L+ P +D PS V V G + ++ D + L R R + A DA M + A A A P ++ +GRK ++L VEK++ +FL+WA
Sbjct: 8 EVVEEDLTPAELAAFHAALESEEVGRMVQPWVPWWTLEAARDVRLGPR---GLSLIEDVSESE--------------PSSSRPQPGLPPP-------------PSQPLLPLSALTK----------NPPSPLLPCILPQLLYAYCYTLRRHNGEPDVDALGAGETLLMLWPGTKDPPPPSPVHALRQTLADAVGSGRGGAPHAFFVAVVGDAVQLLRLGRSAVLLALVDAARMASRARSAAEDLEDDAAPERMR--------------QGRKAFVRQLAAVEKKLVFFLAWA 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10053.56.1 >prot_H-elongata_contig10053.56.1 ID=prot_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp MVQLLRKVRESGKAQDGSDEPWRFSEHRDASDADPGVPDNWPGGREEEEEback to top mRNA from alignment at H-elongata_contig10053:5406..8350- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2945bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10053:5406..8350- >mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)back to top |