mRNA_H-elongata_contig10053.56.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10053.56.1
Unique NamemRNA_H-elongata_contig10053.56.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: D8LQD6_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD6_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 7.940e-80
Identity = 159/333 (47.75%), Postives = 198/333 (59.46%), Query Frame = 2
Query:  926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTT---------------QSPTPKMQEPTQGLDIANAAVGVPEVEL-------------ECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822
            ++DLLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA  VQE+ P    G        P VD   + KH +  ++               +  TP+        +   +  G                    C RH+F+ L     QAP F+T+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATPST  +AL+A   R VE E  GFRGYAESL++DVL +C D RKL CAFQDAW ML AAGR L PS               +   F     ++ ++KAA+ELGKVEKR+GYFL WA + GE  +P M
Sbjct:  218 MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFATPPSGAPXXXXXXRPSTPEQXXXXXXSEFPASRSGXXXXXXXXXXXXXXXXXXXSCTRHSFAALLSQAFQAPGFTTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPSTAGEALAACVERAVEGERCGFRGYAESLQQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 535          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A6H5KU08_9PHAE (HIT-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU08_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.190e-76
Identity = 159/332 (47.89%), Postives = 193/332 (58.13%), Query Frame = 2
Query:  926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTTQSPTPKMQEP---------------------------TQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822
            I+ LLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA  VQE+ P    G        P VD   + KH +  ++   TP    P                                              C RH+F+ L     QAP FST+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATP+T  +AL+A   R +E E  GFRGYAESLR+DVL +C D RKL CAFQDAW ML AAGR L PS               +   F     ++ ++KAA+ELGKVEKR+GYFL WA + GE  +P M
Sbjct:  381 ILGLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFG-TPSSGAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRHSFAALLSQAFQAPGFSTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPATAGEALAACVERALEGERSGFRGYAESLRQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 696          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A835ZEE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.740e-13
Identity = 82/299 (27.42%), Postives = 118/299 (39.46%), Query Frame = 2
Query:  920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACR--VQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTL---SHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLR----EDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789
            E  ++ L++EER+ F+R + SG L R +  W PWW    +  VQE+PP   +  P                          Q+P +G         V + +  C RH  + L   +H++  +     L S   SP LP L  DV  +Y    RLYNGCWC DP+ A+  ++  S VL   A  ++V  A+ +   R     G+  +G A  L     +D L L         A  D  ++  AA           EPG  K                     K L  V KR+ YF +WA
Sbjct:   86 ELSLEHLSKEERAAFMRAVQSGVLTRYVQVWEPWWESPAKLLVQELPPTTSAAQP--------------------------QQPAEGT------YAVVDTDTTCSRHAAAQLLQAAHISLASDGLR-LTSPAASPLLPHLVLDVLCSYAALMRLYNGCWCCDPLQAAADMLQLSAVLSKDARHASVALAMESCHLRQQALTGIA-KGNATQLSIRALKDALSLLSTQVVTQTALLDLMALFAAA---------LQEPGAKK--------------------KKTLALVAKRLEYFAAWA 321          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A0A0KV24_CUCSA (HIT-type domain-containing protein n=2 Tax=Cucumis TaxID=3655 RepID=A0A0A0KV24_CUCSA)

HSP 1 Score: 80.1 bits (196), Expect = 3.990e-12
Identity = 77/254 (30.31%), Postives = 110/254 (43.31%), Query Frame = 2
Query:  887 EEQNQPLGVDDERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQ-ACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDV-LVLCRDHRKLFCAFQDAWSMLNAAGRAL 1636
            EE  + +   D+   D L+EEE+ RFLR +ASG L ++I PW  WW + + R   +  E   G+P    V L +  +  +  T+++      E  Q   I  A    P+  L                 P  S L +  PSP L     D+ Y+Y FT RLYNG W  D  G++L ++  S VL     P TV +ALS+   +        VG      SL +DV  +L      L C   D   ++ A  R L
Sbjct:  107 EETTEKVLAGDQLSFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMKPSARTISLSKE---GTPL---VQLHAAERMTTSLTSET------EVMQSSGIPQA----PDTPL-----------------PPLSKLSTAEPSPLLAVHLIDIIYSYCFTLRLYNGDWQSDATGSALVVLSISSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVSTLLSLGCPALVCLLCDLQRLIQAGERDL 327          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A5A7SW59_CUCME (Aquarius n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SW59_CUCME)

HSP 1 Score: 80.1 bits (196), Expect = 1.580e-11
Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2
Query:  917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636
            D+   D L+EEE+ RFLR +ASG L ++I PW  WW +                  P     S SK  +P        +M         A  + G+P    + P              P  S L +  PSP L     D+ Y+Y FT RLYNG W  D  G++L ++  S VL     P TV +ALS+   +        VG      SL +DV  L       L C   D   ++ A  R L
Sbjct: 1739 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 1949          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: E5GCK6_CUCME (Aquarius n=1 Tax=Cucumis melo subsp. melo TaxID=412675 RepID=E5GCK6_CUCME)

HSP 1 Score: 80.1 bits (196), Expect = 1.610e-11
Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2
Query:  917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636
            D+   D L+EEE+ RFLR +ASG L ++I PW  WW +                  P     S SK  +P        +M         A  + G+P    + P              P  S L +  PSP L     D+ Y+Y FT RLYNG W  D  G++L ++  S VL     P TV +ALS+   +        VG      SL +DV  L       L C   D   ++ A  R L
Sbjct: 1952 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 2162          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: T0Q3L4_SAPDV (HIT-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3L4_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-9
Identity = 56/184 (30.43%), Postives = 81/184 (44.02%), Query Frame = 2
Query:  929 MDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480
            +D LT  ER++FLRE+A GRLG+LIA W PWWT +       P  ++ +          +++H             Q  T   D  +   G  EV  + P+H  +T           S L + P SP L     ++ +AY +T R YNG W  D   AS  L+  S VL       T++   +A
Sbjct:  146 LDALTPNERAQFLREVADGRLGKLIALWTPWWTTS-------PAAYAAATH--------SARH-------------QLITAVDDDEDDIDGDVEVPPQHPKHILTT--RRAKALEPISALHASPNSPVLCCNLFELLFAYAYTLRTYNGDWTADVAEASATLVALSAVLHSQRVYMTIDDVRTA 299          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A067CML1_SAPPC (HIT-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CML1_SAPPC)

HSP 1 Score: 69.3 bits (168), Expect = 1.010e-8
Identity = 56/190 (29.47%), Postives = 84/190 (44.21%), Query Frame = 2
Query:  917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQA--PVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480
            D   +D LT +ER++FLRE+A GRLG+LIA W PWWT +       P  ++ +        + +++H                 Q +   +            P+H    L+    +A  P+ S L + P  P L     ++ +AY +T R YNG W  D + AS  LI  SPVL       T+E   +A
Sbjct:  142 DALTLDALTPDERAQFLREVADGRLGKLIALWTPWWTSS-------PAAYAAA--------TKSARH-----------------QLIVAIDDEXXXXXXXXGLPQHPKQLLTTARAKALEPI-SALHAAPNGPVLRCNLFELLFAYAYTLRDYNGDWTTDVLEASATLIALSPVLHSQRVYLTIEDVRAA 298          
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A1D2A295_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A295_AUXPR)

HSP 1 Score: 67.4 bits (163), Expect = 2.050e-8
Identity = 76/292 (26.03%), Postives = 109/292 (37.33%), Query Frame = 2
Query:  920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWT-QACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRK-LFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789
            E + + LT  E + F   + S  +GR++ PW+PWWT +A R   + P    G     +V  S               P    P  GL                P      LS LT            PPSP LP +   + YAY +T R +NG    D +GA   L+   P  +D   PS V          V    G     +  ++  D + L R  R  +  A  DA  M + A  A       A P  ++              +GRK   ++L  VEK++ +FL+WA
Sbjct:    8 EVVEEDLTPAELAAFHAALESEEVGRMVQPWVPWWTLEAARDVRLGPR---GLSLIEDVSESE--------------PSSSRPQPGLPPP-------------PSQPLLPLSALTK----------NPPSPLLPCILPQLLYAYCYTLRRHNGEPDVDALGAGETLLMLWPGTKDPPPPSPVHALRQTLADAVGSGRGGAPHAFFVAVVGDAVQLLRLGRSAVLLALVDAARMASRARSAAEDLEDDAAPERMR--------------QGRKAFVRQLAAVEKKLVFFLAWA 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LQD6_ECTSI7.940e-8047.75HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KU08_9PHAE1.190e-7647.89HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZEE4_9STRA1.740e-1327.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0A0KV24_CUCSA3.990e-1230.31HIT-type domain-containing protein n=2 Tax=Cucumis... [more]
A0A5A7SW59_CUCME1.580e-1129.63Aquarius n=2 Tax=Cucumis melo var. makuwa TaxID=11... [more]
E5GCK6_CUCME1.610e-1129.63Aquarius n=1 Tax=Cucumis melo subsp. melo TaxID=41... [more]
T0Q3L4_SAPDV1.060e-930.43HIT-type domain-containing protein n=1 Tax=Saprole... [more]
A0A067CML1_SAPPC1.010e-829.47HIT-type domain-containing protein n=1 Tax=Saprole... [more]
A0A1D2A295_AUXPR2.050e-826.03Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10053contigH-elongata_contig10053:5406..8350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue1.1e-73
Seed eggNOG ortholog2880.D8LQD6
Preferred nameZNHIT2
KEGG rclassRC00002,RC00078
KEGG koko:K00888,ko:K02888,ko:K12874
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko03010,ko03040,ko04011,ko04070,map00562,map01100,map03010,map03040,map04011,map04070
KEGG ModuleM00130,M00178,M00355
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.zinc finger
EggNOG OGsKOG4317@1,KOG4317@2759
EC2.7.1.67
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-10_005250.1
Exons4
Model size2477
Cds size1434
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10053.56.1prot_H-elongata_contig10053.56.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10053 5968..7663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.489629-UTR-H-elongata_contig10053:5405..59671622929547.489629-UTR-H-elongata_contig10053:5405..5967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 5406..5967 -
1691679064.1006832-UTR-H-elongata_contig10053:5405..59671691679064.1006832-UTR-H-elongata_contig10053:5405..5967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 5406..5967 -
1622929547.5423388-UTR-H-elongata_contig10053:7663..77201622929547.5423388-UTR-H-elongata_contig10053:7663..7720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 7664..7720 -
1691679064.1319818-UTR-H-elongata_contig10053:7663..77201691679064.1319818-UTR-H-elongata_contig10053:7663..7720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 7664..7720 -
1622929547.5546541-UTR-H-elongata_contig10053:7774..80091622929547.5546541-UTR-H-elongata_contig10053:7774..8009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 7775..8009 -
1691679064.138745-UTR-H-elongata_contig10053:7774..80091691679064.138745-UTR-H-elongata_contig10053:7774..8009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 7775..8009 -
1622929547.5652475-UTR-H-elongata_contig10053:8161..83501622929547.5652475-UTR-H-elongata_contig10053:8161..8350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 8162..8350 -
1691679064.1468992-UTR-H-elongata_contig10053:8161..83501691679064.1468992-UTR-H-elongata_contig10053:8161..8350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 8162..8350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.5063446-CDS-H-elongata_contig10053:5967..63361622929547.5063446-CDS-H-elongata_contig10053:5967..6336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 5968..6336 -
1691679064.112512-CDS-H-elongata_contig10053:5967..63361691679064.112512-CDS-H-elongata_contig10053:5967..6336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 5968..6336 -
1622929547.5264385-CDS-H-elongata_contig10053:6598..76631622929547.5264385-CDS-H-elongata_contig10053:6598..7663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 6599..7663 -
1691679064.1226888-CDS-H-elongata_contig10053:6598..76631691679064.1226888-CDS-H-elongata_contig10053:6598..7663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 6599..7663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10053.56.1

>prot_H-elongata_contig10053.56.1 ID=prot_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp
MVQLLRKVRESGKAQDGSDEPWRFSEHRDASDADPGVPDNWPGGREEEEE
GHDILARVRLEALSLALNAQSSSPDPHIPIPAEPASRTACLPPPFTEGKK
SKRRKDRTHAARSNAMGRTGHSIVSRRLEAQPEGEEEQNQPLGVDDERIM
DLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPF
FPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPR
HTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCW
CGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYA
ESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIG
QGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVMAAA
IGSDASSTLDPLALDVGSTALAALGED*
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mRNA from alignment at H-elongata_contig10053:5406..8350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2945bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)
CGTAGATATGTTTCACTCTACAGCACTACTGTTGAATGATTTGTCGCCTC GACCCTAACCCAGCACCCTCAATACCCGGCCGCGATTGGAGATACCACAG CTGCGCAGGTAATGGCTGGAATATGGTACTCCACGTTCGAGTTTTTAGAA CCCTCGAAGAAGGCAGGCCTACCTGCCACATGATAAACCCTGCCCTCCTT AAATCAAGGCGTGTCTCGCCGATCTTGACTGCCCTATCGCAGATTTTGTA TGATTCGTCTTGTTTTCTAGCGTCTCCCTCGCTGTACTCCTTCCTTGCTG TAGCTTCTTTTGTTCGTACAAAGAACCACGTTCTGCTGTATTTTACTTTG TACGAGATTCGGTGCGTAACCTGGAGGTGCGTCTTCTCTCATTGTTAAAC TCTTCAACGGCATGGATCGCGGTAACCCCGGAGCAAGTCCGTCTCCACCC TTGACCGCATTTAACGCTCTAAATATAAGCGGCCTTAGCATATATTAAAC TCTCGTATGTTAGGGAGGCGTAACGGGTCGTGCAATGCCGTTTGTGTTTT GGTGCTCCCCAAAAACGTAACCGCAGGCGCATGGATCTCGGTGTACGGAG GCGTTTTTCCGCGAGCACGTGGAGCGAGAGACGAGGGTGCGGGAGGGCGG AGACGGGCGGGTCGGGGCTCGGAAGCGTCGAGAGGACATGGTGCAACTAT TGCGTAAAGTCCGCGAGAGTGGCAAGGCTCAGGATGGAAGCGATGAACCG TGGAGGTTTTCTGAGCATCGAGATGCGAGTGATGCTGATCCGGGTGTCCC CGACAACTGGCCGGGGGGAAGGGAAGAGGAGGAGGAGGGGCATGATATAT TGGCACGGGTACGGTTAGAAGCTCTGTCGCTGGCGCTGAATGCCCAAAGC TCCTCTCCGGACCCTCACATCCCGATCCCGGCCGAACCTGCCTCGCGGAC CGCCTGCCTGCCCCCACCCTTTACTGAGGGTAAAAAAAGCAAGCGTCGAA AAGATCGAACACATGCGGCTCGGAGTAACGCCATGGGCAGGACTGGACAC TCCATAGTCAGCAGAAGACTCGAGGCGCAGCCCGAGGGCGAAGAAGAGCA AAATCAACCCCTGGGTGTCGATGACGAACGTATCATGGACCTCCTAACCG AAGAAGAGAGGAGCCGATTCTTGCGAGAGATTGCCAGTGGGCGCCTCGGT AGACTGATCGCCCCGTGGATACCGTGGTGGACGCAGGCGTGCAGGGTGCA AGAAATCCCGCCAGAGGTTCATTCCGGATCGCCTTTTTTCCCGGAAGTGG ACCTCTCCTCCAACTCCAAGCACATATCCCCGACAACGACACAGTCTCCC ACGCCCAAGATGCAGGAGCCGACTCAAGGTCTTGATATCGCCAACGCGGC GGTAGGTGTACCCGAAGTAGAATTAGAGTGCCCACGACATACTTTCTCTA CGCTGTCTCACCTGACGAATCAGGCGCCCGTTTTTTCGACTCTCTGCTCG AGGCCGCCGTCGCCCTCACTGCCAGCGCTCGCGACCGACGTCGCGTACGC GTACGTCTTCACGGCGCGACTTTACAACGGATGCTGGTGCGGCGATCCGG TCGGGGCGTCTCTGGCGCTCATTGGCGCGTCCCCTGTTTTGAGGGACGGG GCGACGCCGTCCACGGTGGAGCAAGCGCTGTCCGCCTCTCAGAGGCGAGT GGTGGAGAGCGAGGGCGTCGGCTTCAGAGGGTACGCGGAATCGCTGCGGG AGGTGCGTTACTTCGCGACTGAACCATATAAACCCCTTACGTCGAAAGTA ATCGGGATCGGGGCGAACAACGACGTAGATAACGAGAGCGCGCCTACCGT GTGGATCGCATGCAGCTGCTAGTCTTTGCGATCTCCTGACATGTAAGATC TGCGTTCGGCATTTTGGAATTTTCGCTACTTACGGTACGCGGCAACGTGA CGCATACGAACCCCCGCCCAAGATACCAACATCTTGCCCTCGGGTGGCGT GTTTTGGTGTGCAGGACGTGCTCGTGCTCTGCCGCGACCACCGCAAGCTC TTCTGCGCATTCCAGGATGCCTGGAGCATGCTCAATGCGGCGGGTCGCGC CCTCGTTCCCTCAAACATGGCAGCCGAACCCGGTGGCCTCAAGATAGGCC AGGGAAGAGTCGGAGCCGAATTTGGCGGCAACAAGAGAGGTCGAAAGAAG GCGGCGAAGGAGCTCGGCAAGGTGGAAAAACGTGTCGGCTACTTCCTTTC GTGGGCGCTATCGTGCGGCGAGAGGGCCACGCCCGTTATGGCCGCGGCCA TCGGTAGCGACGCTTCGAGCACTTTGGACCCTCTCGCCTTGGACGTGGGA AGCACAGCACTGGCTGCGTTGGGGGAAGATTAACTTGGAGAGGGCAGAGT CTAGAGCGAGATCCCAGTGGGGGCTGATCAGGCAAAAAAGGGCGCCTATC GAGTAAGCGGGCGTTCCCAAAGGAAAGTGCCGACGGGTTGAGGGGATCGA GCGGTCTTGGAATCAGAGTGCTGATGCCGGCGAGATTTTGATCGAGGCGC GTTTCACGCACTAATTTTACCTCGTGAACCGCCTATTACCCTGTAGAGCT TCGGCCGTTTCTAAATTTTGTTCGAAAATAGCACCTTGGAATTCTCCAGG GAACTTGATGTAAATAATTATTAATTCTAGCGTAGGGAGAAAATGTGTGC TGTGCTACTACGGTTATATTTTGCTGTAATCGCGGGGGTAGCTGCAACGG CGGTCGGGCTGGGCCTTCCCAATAACAAAAACAAACAATTTATCAAATGA AGCAATATTCTTCTATTTCTCTTTCCTACAATATGTTCTATAGTATTAGT CGCGAGGACGTTTTTGACTGGATAAATATAATTTTTCCTCTTTTTCCCCG CCCGCCAAATCCCCCTCTCTGGTGTTGATCCCGAATATAACGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig10053:5406..8350-

>mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)
ATGGTGCAACTATTGCGTAAAGTCCGCGAGAGTGGCAAGGCTCAGGATGG
AAGCGATGAACCGTGGAGGTTTTCTGAGCATCGAGATGCGAGTGATGCTG
ATCCGGGTGTCCCCGACAACTGGCCGGGGGGAAGGGAAGAGGAGGAGGAG
GGGCATGATATATTGGCACGGGTACGGTTAGAAGCTCTGTCGCTGGCGCT
GAATGCCCAAAGCTCCTCTCCGGACCCTCACATCCCGATCCCGGCCGAAC
CTGCCTCGCGGACCGCCTGCCTGCCCCCACCCTTTACTGAGGGTAAAAAA
AGCAAGCGTCGAAAAGATCGAACACATGCGGCTCGGAGTAACGCCATGGG
CAGGACTGGACACTCCATAGTCAGCAGAAGACTCGAGGCGCAGCCCGAGG
GCGAAGAAGAGCAAAATCAACCCCTGGGTGTCGATGACGAACGTATCATG
GACCTCCTAACCGAAGAAGAGAGGAGCCGATTCTTGCGAGAGATTGCCAG
TGGGCGCCTCGGTAGACTGATCGCCCCGTGGATACCGTGGTGGACGCAGG
CGTGCAGGGTGCAAGAAATCCCGCCAGAGGTTCATTCCGGATCGCCTTTT
TTCCCGGAAGTGGACCTCTCCTCCAACTCCAAGCACATATCCCCGACAAC
GACACAGTCTCCCACGCCCAAGATGCAGGAGCCGACTCAAGGTCTTGATA
TCGCCAACGCGGCGGTAGGTGTACCCGAAGTAGAATTAGAGTGCCCACGA
CATACTTTCTCTACGCTGTCTCACCTGACGAATCAGGCGCCCGTTTTTTC
GACTCTCTGCTCGAGGCCGCCGTCGCCCTCACTGCCAGCGCTCGCGACCG
ACGTCGCGTACGCGTACGTCTTCACGGCGCGACTTTACAACGGATGCTGG
TGCGGCGATCCGGTCGGGGCGTCTCTGGCGCTCATTGGCGCGTCCCCTGT
TTTGAGGGACGGGGCGACGCCGTCCACGGTGGAGCAAGCGCTGTCCGCCT
CTCAGAGGCGAGTGGTGGAGAGCGAGGGCGTCGGCTTCAGAGGGTACGCG
GAATCGCTGCGGGAGATGGTGCAACTATTGCGTAAAGTCCGCGAGAGTGG
CAAGGCTCAGGATGGAAGCGATGAACCGTGGAGGTTTTCTGAGCATCGAG
ATGCGAGTGATGCTGATCCGGGTGTCCCCGACAACTGGCCGGGGGGAAGG
GAAGAGGAGGAGGAGGGGCATGATATATTGGCACGGGTACGGTTAGAAGC
TCTGTCGCTGGCGCTGAATGCCCAAAGCTCCTCTCCGGACCCTCACATCC
CGATCCCGGCCGAACCTGCCTCGCGGACCGCCTGCCTGCCCCCACCCTTT
ACTGAGGGTAAAAAAAGCAAGCGTCGAAAAGATCGAACACATGCGGCTCG
GAGTAACGCCATGGGCAGGACTGGACACTCCATAGTCAGCAGAAGACTCG
AGGCGCAGCCCGAGGGCGAAGAAGAGCAAAATCAACCCCTGGGTGTCGAT
GACGAACGTATCATGGACCTCCTAACCGAAGAAGAGAGGAGCCGATTCTT
GCGAGAGATTGCCAGTGGGCGCCTCGGTAGACTGATCGCCCCGTGGATAC
CGTGGTGGACGCAGGCGTGCAGGGTGCAAGAAATCCCGCCAGAGGTTCAT
TCCGGATCGCCTTTTTTCCCGGAAGTGGACCTCTCCTCCAACTCCAAGCA
CATATCCCCGACAACGACACAGTCTCCCACGCCCAAGATGCAGGAGCCGA
CTCAAGGTCTTGATATCGCCAACGCGGCGGTAGGTGTACCCGAAGTAGAA
TTAGAGTGCCCACGACATACTTTCTCTACGCTGTCTCACCTGACGAATCA
GGCGCCCGTTTTTTCGACTCTCTGCTCGAGGCCGCCGTCGCCCTCACTGC
CAGCGCTCGCGACCGACGTCGCGTACGCGTACGTCTTCACGGCGCGACTT
TACAACGGATGCTGGTGCGGCGATCCGGTCGGGGCGTCTCTGGCGCTCAT
TGGCGCGTCCCCTGTTTTGAGGGACGGGGCGACGCCGTCCACGGTGGAGC
AAGCGCTGTCCGCCTCTCAGAGGCGAGTGGTGGAGAGCGAGGGCGTCGGC
TTCAGAGGGTACGCGGAATCGCTGCGGGAGGACGTGCTCGTGCTCTGCCG
CGACCACCGCAAGCTCTTCTGCGCATTCCAGGATGCCTGGAGCATGCTCA
ATGCGGCGGGTCGCGCCCTCGTTCCCTCAAACATGGCAGCCGAACCCGGT
GGCCTCAAGATAGGCCAGGGAAGAGTCGGAGCCGAATTTGGCGGCAACAA
GAGAGGTCGAAAGAAGGCGGCGAAGGAGCTCGGCAAGGTGGAAAAACGTG
TCGGCTACTTCCTTTCGTGGGCGCTATCGTGCGGCGAGAGGGCCACGCCC
GTTATGGCCGCGGCCATCGGTAGCGACGCTTCGAGCACTTTGGACCCTCT
CGCCTTGGACGTGGGAAGCACAGCACTGGCTGCGTTGGGGGAAGATTAAG
ACGTGCTCGTGCTCTGCCGCGACCACCGCAAGCTCTTCTGCGCATTCCAG
GATGCCTGGAGCATGCTCAATGCGGCGGGTCGCGCCCTCGTTCCCTCAAA
CATGGCAGCCGAACCCGGTGGCCTCAAGATAGGCCAGGGAAGAGTCGGAG
CCGAATTTGGCGGCAACAAGAGAGGTCGAAAGAAGGCGGCGAAGGAGCTC
GGCAAGGTGGAAAAACGTGTCGGCTACTTCCTTTCGTGGGCGCTATCGTG
CGGCGAGAGGGCCACGCCCGTTATGGCCGCGGCCATCGGTAGCGACGCTT
CGAGCACTTTGGACCCTCTCGCCTTGGACGTGGGAAGCACAGCACTGGCT
GCGTTGGGGGAAGATTAA
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